## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[L1922-H4S47C_250M_30min.2x36mers.sacCer3.unique.nochrM.bam] OUTPUT=L1922-H4S47C_250M_30min.2x36mers.sacCer3.unique.nochrM.dedup.bam METRICS_FILE=L1922-H4S47C_250M_30min.2x36mers.sacCer3.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Mon Nov 09 10:26:58 PST 2020 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 47004 0 0 4399 620 0.093588 268981 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1.012233 2.0 1.862173 3.0 2.575841 4.0 3.175085 5.0 3.678251 6.0 4.100744 7.0 4.455498 8.0 4.753373 9.0 5.00349 10.0 5.213505 11.0 5.389847 12.0 5.537917 13.0 5.662246 14.0 5.766642 15.0 5.854299 16.0 5.927902 17.0 5.989704 18.0 6.041598 19.0 6.085171 20.0 6.121758 21.0 6.152479 22.0 6.178274 23.0 6.199934 24.0 6.218121 25.0 6.233392 26.0 6.246214 27.0 6.256981 28.0 6.266022 29.0 6.273613 30.0 6.279986 31.0 6.285338 32.0 6.289832 33.0 6.293606 34.0 6.296774 35.0 6.299434 36.0 6.301668 37.0 6.303544 38.0 6.305119 39.0 6.306441 40.0 6.307552 41.0 6.308484 42.0 6.309267 43.0 6.309924 44.0 6.310476 45.0 6.31094 46.0 6.311329 47.0 6.311656 48.0 6.31193 49.0 6.31216 50.0 6.312354 51.0 6.312516 52.0 6.312653 53.0 6.312767 54.0 6.312863 55.0 6.312944 56.0 6.313012 57.0 6.313069 58.0 6.313117 59.0 6.313157 60.0 6.31319 61.0 6.313219 62.0 6.313243 63.0 6.313262 64.0 6.313279 65.0 6.313293 66.0 6.313305 67.0 6.313315 68.0 6.313323 69.0 6.31333 70.0 6.313336 71.0 6.313341 72.0 6.313345 73.0 6.313349 74.0 6.313352 75.0 6.313354 76.0 6.313356 77.0 6.313358 78.0 6.313359 79.0 6.313361 80.0 6.313362 81.0 6.313362 82.0 6.313363 83.0 6.313364 84.0 6.313364 85.0 6.313365 86.0 6.313365 87.0 6.313365 88.0 6.313366 89.0 6.313366 90.0 6.313366 91.0 6.313366 92.0 6.313366 93.0 6.313366 94.0 6.313367 95.0 6.313367 96.0 6.313367 97.0 6.313367 98.0 6.313367 99.0 6.313367 100.0 6.313367