## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1909-GM18278_FS_test_50K.2x36mers.hg38-female.unique.nochrM.bam] OUTPUT=L1909-GM18278_FS_test_50K.2x36mers.hg38-female.unique.nochrM.dedup.bam METRICS_FILE=L1909-GM18278_FS_test_50K.2x36mers.hg38-female.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 05 14:58:38 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	3274914	0	0	211972	31126	0.064726	27999873

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.009045
2.0	1.906712
3.0	2.705293
4.0	3.415726
5.0	4.047741
6.0	4.609994
7.0	5.110184
8.0	5.555164
9.0	5.951026
10.0	6.303192
11.0	6.616487
12.0	6.895199
13.0	7.143147
14.0	7.363727
15.0	7.559958
16.0	7.73453
17.0	7.889832
18.0	8.027991
19.0	8.150901
20.0	8.260244
21.0	8.357517
22.0	8.444053
23.0	8.521037
24.0	8.589524
25.0	8.650451
26.0	8.704653
27.0	8.752872
28.0	8.795769
29.0	8.833931
30.0	8.86788
31.0	8.898082
32.0	8.92495
33.0	8.948853
34.0	8.970117
35.0	8.989034
36.0	9.005863
37.0	9.020834
38.0	9.034153
39.0	9.046002
40.0	9.056542
41.0	9.06592
42.0	9.074262
43.0	9.081683
44.0	9.088285
45.0	9.094159
46.0	9.099384
47.0	9.104032
48.0	9.108168
49.0	9.111847
50.0	9.115119
51.0	9.118031
52.0	9.120621
53.0	9.122925
54.0	9.124975
55.0	9.126799
56.0	9.128421
57.0	9.129864
58.0	9.131148
59.0	9.13229
60.0	9.133307
61.0	9.134211
62.0	9.135015
63.0	9.13573
64.0	9.136367
65.0	9.136933
66.0	9.137437
67.0	9.137885
68.0	9.138283
69.0	9.138638
70.0	9.138954
71.0	9.139234
72.0	9.139484
73.0	9.139706
74.0	9.139904
75.0	9.140079
76.0	9.140236
77.0	9.140375
78.0	9.140499
79.0	9.140609
80.0	9.140707
81.0	9.140794
82.0	9.140871
83.0	9.14094
84.0	9.141002
85.0	9.141056
86.0	9.141105
87.0	9.141148
88.0	9.141187
89.0	9.141221
90.0	9.141251
91.0	9.141278
92.0	9.141302
93.0	9.141324
94.0	9.141343
95.0	9.14136
96.0	9.141375
97.0	9.141388
98.0	9.1414
99.0	9.141411
100.0	9.14142