## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1908-GM18278_FS_test_400K.2x36mers.hg38-female.unique.nochrM.bam] OUTPUT=L1908-GM18278_FS_test_400K.2x36mers.hg38-female.unique.nochrM.dedup.bam METRICS_FILE=L1908-GM18278_FS_test_400K.2x36mers.hg38-female.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 05 14:58:39 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8960607	0	0	299881	73424	0.033467	171411205

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.008048
2.0	1.964753
3.0	2.872731
4.0	3.734463
5.0	4.552304
6.0	5.328491
7.0	6.065145
8.0	6.764279
9.0	7.427804
10.0	8.057534
11.0	8.65519
12.0	9.222406
13.0	9.760732
14.0	10.27164
15.0	10.756526
16.0	11.216716
17.0	11.653467
18.0	12.067972
19.0	12.461366
20.0	12.834724
21.0	13.189065
22.0	13.525359
23.0	13.844525
24.0	14.147434
25.0	14.434916
26.0	14.707755
27.0	14.966698
28.0	15.212452
29.0	15.44569
30.0	15.667048
31.0	15.877131
32.0	16.076515
33.0	16.265743
34.0	16.445334
35.0	16.615777
36.0	16.77754
37.0	16.931063
38.0	17.076767
39.0	17.21505
40.0	17.34629
41.0	17.470845
42.0	17.589056
43.0	17.701247
44.0	17.807724
45.0	17.908777
46.0	18.004683
47.0	18.095705
48.0	18.182091
49.0	18.264077
50.0	18.341887
51.0	18.415734
52.0	18.48582
53.0	18.552336
54.0	18.615464
55.0	18.675377
56.0	18.732238
57.0	18.786204
58.0	18.837421
59.0	18.886029
60.0	18.932161
61.0	18.975944
62.0	19.017497
63.0	19.056933
64.0	19.094361
65.0	19.129883
66.0	19.163595
67.0	19.19559
68.0	19.225956
69.0	19.254775
70.0	19.282126
71.0	19.308084
72.0	19.33272
73.0	19.356101
74.0	19.378292
75.0	19.399352
76.0	19.41934
77.0	19.438309
78.0	19.456312
79.0	19.473399
80.0	19.489615
81.0	19.505005
82.0	19.519611
83.0	19.533474
84.0	19.54663
85.0	19.559116
86.0	19.570967
87.0	19.582213
88.0	19.592887
89.0	19.603018
90.0	19.612632
91.0	19.621756
92.0	19.630416
93.0	19.638635
94.0	19.646435
95.0	19.653838
96.0	19.660864
97.0	19.667532
98.0	19.673861
99.0	19.679867
100.0	19.685567