## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1908-GM18278_FS_test_400K.2x20mers.hg38-female.unique.nochrM.bam] OUTPUT=L1908-GM18278_FS_test_400K.2x20mers.hg38-female.unique.nochrM.dedup.bam METRICS_FILE=L1908-GM18278_FS_test_400K.2x20mers.hg38-female.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Nov 06 12:33:43 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	9984331	0	0	323796	81357	0.03243	198940142

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.008011
2.0	1.966681
3.0	2.878425
4.0	3.74554
5.0	4.57021
6.0	5.354514
7.0	6.100427
8.0	6.809828
9.0	7.484504
10.0	8.126156
11.0	8.7364
12.0	9.316772
13.0	9.868737
14.0	10.393683
15.0	10.892933
16.0	11.367745
17.0	11.819316
18.0	12.248783
19.0	12.657228
20.0	13.045681
21.0	13.415118
22.0	13.766472
23.0	14.100628
24.0	14.418427
25.0	14.72067
26.0	15.008119
27.0	15.281497
28.0	15.541494
29.0	15.788764
30.0	16.02393
31.0	16.247585
32.0	16.460293
33.0	16.662589
34.0	16.854982
35.0	17.037958
36.0	17.211978
37.0	17.377479
38.0	17.53488
39.0	17.684576
40.0	17.826944
41.0	17.962343
42.0	18.091115
43.0	18.213584
44.0	18.330058
45.0	18.44083
46.0	18.546181
47.0	18.646374
48.0	18.741663
49.0	18.832288
50.0	18.918477
51.0	19.000447
52.0	19.078405
53.0	19.152547
54.0	19.223059
55.0	19.29012
56.0	19.353899
57.0	19.414555
58.0	19.472243
59.0	19.527106
60.0	19.579285
61.0	19.628909
62.0	19.676104
63.0	19.720989
64.0	19.763677
65.0	19.804275
66.0	19.842886
67.0	19.879607
68.0	19.914531
69.0	19.947745
70.0	19.979333
71.0	20.009376
72.0	20.037947
73.0	20.06512
74.0	20.090963
75.0	20.115541
76.0	20.138916
77.0	20.161147
78.0	20.182289
79.0	20.202397
80.0	20.221521
81.0	20.239708
82.0	20.257005
83.0	20.273455
84.0	20.289101
85.0	20.30398
86.0	20.318131
87.0	20.331589
88.0	20.344389
89.0	20.356562
90.0	20.368139
91.0	20.37915
92.0	20.389621
93.0	20.39958
94.0	20.409052
95.0	20.418059
96.0	20.426626
97.0	20.434774
98.0	20.442523
99.0	20.449892
100.0	20.456901