## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L2600-7x_TetO-2hrs-H3K4me3.2x36mers.hg38-male+opJS5_7x_TetO_b2.unique.bam] OUTPUT=L2600-7x_TetO-2hrs-H3K4me3.2x36mers.hg38-male+opJS5_7x_TetO_b2.unique.dedup.bam METRICS_FILE=L2600-7x_TetO-2hrs-H3K4me3.2x36mers.hg38-male+opJS5_7x_TetO_b2.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sun Dec 25 20:51:25 PST 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	46371078	0	0	4442063	379345	0.095794	244755612

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.007492
2.0	1.841097
3.0	2.530828
4.0	3.101516
5.0	3.573708
6.0	3.964402
7.0	4.287665
8.0	4.555135
9.0	4.776442
10.0	4.959553
11.0	5.11106
12.0	5.236418
13.0	5.34014
14.0	5.42596
15.0	5.496968
16.0	5.555721
17.0	5.604334
18.0	5.644556
19.0	5.677836
20.0	5.705372
21.0	5.728156
22.0	5.747007
23.0	5.762605
24.0	5.775511
25.0	5.786189
26.0	5.795024
27.0	5.802335
28.0	5.808383
29.0	5.813388
30.0	5.817529
31.0	5.820955
32.0	5.82379
33.0	5.826136
34.0	5.828076
35.0	5.829682
36.0	5.831011
37.0	5.83211
38.0	5.83302
39.0	5.833772
40.0	5.834395
41.0	5.83491
42.0	5.835337
43.0	5.835689
44.0	5.835981
45.0	5.836223
46.0	5.836423
47.0	5.836588
48.0	5.836725
49.0	5.836838
50.0	5.836932
51.0	5.837009
52.0	5.837073
53.0	5.837126
54.0	5.83717
55.0	5.837206
56.0	5.837236
57.0	5.837261
58.0	5.837282
59.0	5.837299
60.0	5.837313
61.0	5.837325
62.0	5.837334
63.0	5.837342
64.0	5.837349
65.0	5.837354
66.0	5.837359
67.0	5.837363
68.0	5.837366
69.0	5.837368
70.0	5.83737
71.0	5.837372
72.0	5.837373
73.0	5.837375
74.0	5.837376
75.0	5.837377
76.0	5.837377
77.0	5.837378
78.0	5.837378
79.0	5.837379
80.0	5.837379
81.0	5.837379
82.0	5.837379
83.0	5.83738
84.0	5.83738
85.0	5.83738
86.0	5.83738
87.0	5.83738
88.0	5.83738
89.0	5.83738
90.0	5.83738
91.0	5.83738
92.0	5.83738
93.0	5.83738
94.0	5.83738
95.0	5.83738
96.0	5.83738
97.0	5.83738
98.0	5.83738
99.0	5.83738
100.0	5.83738