import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Felis nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Felis_nigripes-Felis_nigripes_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Lasiurus seminolus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Lasiurus_seminolus-Lasiurus_seminolus_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Leopardus tigrinus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Leopardus_tigrinus-Leopardus_tigrinus_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.162.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.163.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.164.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.165.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.166.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.167.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.168.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.169.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.170.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.171.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.172.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.173.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.174.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.175.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.176.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.177.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.178.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.179.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.180.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.181.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.182.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.183.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.184.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.185.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.186.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.187.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.188.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.189.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.190.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.191.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Macropus rufogriseus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Macropus_rufogriseus-Macropus_rufogriseus_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Martes flavigula' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Martes_flavigula-mfla.min_150.pseudohap2.1_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones libycus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_libycus-Meriones_libycusi_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Meriones unguiculatus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Meriones_unguiculatus-ASM813125v1_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mesocricetus auratus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mesocricetus_auratus-MesAur1.0_HiC-DNAZoo.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus agrestis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_agrestis-GCA_001305995.1_ASM130599v1_genomic_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus mexicanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_mexicanus-Microtus_mexicanus_prelim_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.162.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.163.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.164.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.165.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.166.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.167.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.168.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.169.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.170.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.171.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.172.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.173.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.174.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.175.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.176.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.177.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.178.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.179.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.180.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.181.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.182.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.183.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.184.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.185.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.186.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.187.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.188.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.189.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.190.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.191.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.192.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.193.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.194.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.195.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.196.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.197.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.198.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.199.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.200.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.201.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.202.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.203.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.204.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.205.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.206.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.207.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.208.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.209.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.210.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.211.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.212.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.213.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.214.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.215.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.216.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.217.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.218.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.219.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.220.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.221.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.222.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.223.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.224.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.225.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.226.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.227.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Microtus oregoni' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Microtus_oregoni-GCA_018167655.1_Mior012_genomic_prelim_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Miopithecus talapoin' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Miopithecus_talapoin-Miopithecus_talapoin_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus muntjak' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_muntjak-CMJ_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Muntiacus reevesi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Muntiacus_reevesi-CIJ_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela erminea' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_erminea-Mustela_erminea_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nigripes' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nigripes-musNig1_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.162.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.163.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.164.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.165.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.166.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.167.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.168.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.169.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.170.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.171.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.172.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.173.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Mustela nivalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Mustela_nivalis-Mustela_nivalis_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.162.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.163.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.164.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.165.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.166.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.167.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.168.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.169.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.170.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.171.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.172.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.173.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.174.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.175.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.176.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.177.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.178.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.179.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.180.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.181.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.182.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.183.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.184.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.185.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myodes rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myodes_rutilus-Myodes_rutilus_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis lucifugus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_lucifugus-Myoluc2.0_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Myotis yumanensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Myotis_yumanensis-Myotis_yumanensis_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.162.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.163.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.164.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.165.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.166.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.167.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.168.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.169.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.170.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.171.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.172.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.173.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.174.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.175.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.176.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.177.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.178.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.179.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.180.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.181.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.182.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.183.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.184.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.185.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.186.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.187.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.188.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.189.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.190.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.191.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.192.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.193.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.194.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.195.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.196.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.197.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.198.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.199.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.200.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.201.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.202.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.203.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.204.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.205.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.206.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.207.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.208.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.209.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.210.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.211.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.212.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.213.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.214.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.215.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.216.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.217.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.218.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.219.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.220.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.221.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.222.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.223.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.224.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.225.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.226.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.227.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.228.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.229.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.230.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.231.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.232.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.233.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.234.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.235.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.236.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.237.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.238.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.239.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.240.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.241.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.242.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.243.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.244.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.245.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.246.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.247.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.248.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.249.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Neotoma phenax' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Neotoma_phenax-Neotoma_phenax_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.162.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.163.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.164.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.165.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.166.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.167.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.168.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.169.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.170.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.171.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.172.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.173.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.174.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.175.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.176.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.177.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.178.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.179.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.180.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Onychomys leucogaster' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Onychomys_leucogaster-Onychomys_leucogaster_prelim_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Oryx dammah' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Oryx_dammah-oryx.1_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Osphranter robustus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Osphranter_robustus-Osphranter_robustus_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Otocolobus manul' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Otocolobus_manul-Otocolobus_manul_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ovis canadensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ovis_canadensis-GCA_004026945.1_OviCan_v1_BIUU_genomic_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Papio papio' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Papio_papio-Papio_papio_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus crinitus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_crinitus-pecr10X_v2_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.152.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.153.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.154.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.155.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.156.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.157.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.158.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.159.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.160.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.161.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.162.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.163.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.164.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.165.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.166.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.167.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.168.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.169.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.170.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.171.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.172.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.173.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.174.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.175.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.176.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.177.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.178.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.179.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.180.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.181.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.182.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.183.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.184.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.185.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.186.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.187.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.188.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.189.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.190.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.191.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.192.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.193.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.194.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.195.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.196.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.197.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.198.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.199.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.200.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.201.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.202.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.203.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.204.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.205.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.206.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.207.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.208.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.209.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.210.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.211.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.212.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.213.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.214.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.215.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.216.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.217.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.218.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.219.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.220.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.221.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.222.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.223.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.224.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.225.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.226.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.227.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.228.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.229.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.230.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.231.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.232.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.233.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.234.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.235.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.236.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.237.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.238.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.239.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.240.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.241.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.242.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.243.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.244.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.245.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.246.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.247.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.248.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.249.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.250.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.251.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.252.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.253.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.254.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.255.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.256.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.257.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.258.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.259.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.260.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.261.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.262.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.263.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.264.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.265.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.266.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.267.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.268.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.269.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.270.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.271.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.272.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.273.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.274.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.275.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.276.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.277.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.278.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.279.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.280.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.281.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.282.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.283.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.284.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.285.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.286.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.287.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.288.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.289.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.290.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.291.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.292.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.293.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.294.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.295.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.296.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.297.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.298.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.299.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.300.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.301.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.302.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.303.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.304.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.305.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.306.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.307.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.308.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.309.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.310.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.311.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.312.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.313.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.314.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus difficilis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_difficilis-Peromyscus_difficilis_prelim_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Peromyscus eremicus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Peromyscus_eremicus-Peer1.6.0_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.127.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.128.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.129.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.130.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.131.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.132.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.133.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.134.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.135.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.136.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.137.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.138.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.139.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.140.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.141.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.142.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.143.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.144.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.145.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.146.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.147.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.148.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.149.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.150.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.151.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Romerolagus diazi' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Romerolagus_diazi-Romerolagus_diazi_prelim_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Saimiri boliviensis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Saimiri_boliviensis-saiBolDis_HiC-DNAZoo.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sigmodon hispidus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sigmodon_hispidus-GCA_004025045.1_SigHis_v1_BIUU_genomic_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Sylvilagus transitionalis' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Sylvilagus_transitionalis-Sylvilagus_transitionalis_HiC_2.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Tapirus terrestris' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Tapirus_terrestris-Tapirus_terrestris_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Trachypithecus obscurus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Trachypithecus_obscurus-Trachypithecus_obscurus_prelim_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Urocyon littoralis catalinae' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Ursus americanus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Ursus_americanus-ASM334442v1_HiC-DNAZoo.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Xerus rutilus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Xerus_rutilus-Xerus_rutilus_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.103.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.104.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.105.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.100.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.101.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.102.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.106.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.107.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.108.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.109.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.110.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.111.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.112.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.113.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.114.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.115.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.116.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.117.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.118.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.119.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.120.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.121.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.122.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.123.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.124.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.125.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.126.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.39.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.40.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.41.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.42.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.43.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.44.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.45.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.46.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.47.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.48.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.49.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.50.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.51.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.52.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.53.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.54.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.55.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.56.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.57.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.58.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.59.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.60.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.61.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.62.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.63.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.64.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.65.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.66.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.67.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.68.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.69.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.70.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.71.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.72.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.73.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.74.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.75.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.76.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.77.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.78.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.79.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.80.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.81.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.82.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.83.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.84.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.85.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.86.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.87.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.88.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.89.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.90.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.91.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.92.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.93.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.94.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.95.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.96.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.97.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.98.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.99.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Allochrocebus lhoesti' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Allochrocebus_lhoesti-Allochrocebus_lhoesti_prelim_HiC.chunks.9.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.10.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.11.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.12.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.14.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.15.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.18.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.19.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.13.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.16.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.17.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.1.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.20.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.21.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.22.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.23.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.24.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.25.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.26.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.27.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.28.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.29.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.2.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.30.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.31.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.32.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.33.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.34.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.35.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.36.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.37.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.38.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.3.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.4.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.5.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.6.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.7.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.8.fa &")
import os; os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE"; os.system("perl /oak/stanford/groups/akundaje/marinovg/programs/RepeatMasker-4.1.5/RepeatMasker -e hmmer -species 'Cavia porcellus' -pa 6 -xsmall /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-08-15-Cactus/Cavia_porcellus-Cavpor3.0_HiC-DNAZoo.chunks.9.fa &")