python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py L2202-Dendrolagus_matschiei-Matschies_tree-kangaroo-Sample4083.2x36mers.Dendrolagus_matschiei_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 L2202-Dendrolagus_matschiei-Matschies_tree-kangaroo-Sample4083.2x36mers.Dendrolagus_matschiei_HiC+chrM.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Dendrolagus_matschiei-Dendrolagus_matschiei_HiC/Dendrolagus_matschiei-Dendrolagus_matschiei_HiC+chrM.chrom.sizes L2202-Dendrolagus_matschiei-Matschies_tree-kangaroo-Sample4083.2x36mers.Dendrolagus_matschiei_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py L2214-Dendrolagus_matschiei-Matschies_tree-kangaroo-Sample4083.2x36mers.Dendrolagus_matschiei_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 L2214-Dendrolagus_matschiei-Matschies_tree-kangaroo-Sample4083.2x36mers.Dendrolagus_matschiei_HiC+chrM.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Dendrolagus_matschiei-Dendrolagus_matschiei_HiC/Dendrolagus_matschiei-Dendrolagus_matschiei_HiC+chrM.chrom.sizes L2214-Dendrolagus_matschiei-Matschies_tree-kangaroo-Sample4083.2x36mers.Dendrolagus_matschiei_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py L2203-Miopithecus_talapoin-Southern_Talapoin_monkey-Sample4097.2x36mers.Miopithecus_talapoin_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 L2203-Miopithecus_talapoin-Southern_Talapoin_monkey-Sample4097.2x36mers.Miopithecus_talapoin_HiC+chrM.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Miopithecus_talapoin-Miopithecus_talapoin_HiC/Miopithecus_talapoin-Miopithecus_talapoin_HiC+chrM.chrom.sizes L2203-Miopithecus_talapoin-Southern_Talapoin_monkey-Sample4097.2x36mers.Miopithecus_talapoin_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py L2215-Miopithecus_talapoin-Southern_Talapoin_monkey-Sample4097.2x36mers.Miopithecus_talapoin_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 L2215-Miopithecus_talapoin-Southern_Talapoin_monkey-Sample4097.2x36mers.Miopithecus_talapoin_HiC+chrM.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Miopithecus_talapoin-Miopithecus_talapoin_HiC/Miopithecus_talapoin-Miopithecus_talapoin_HiC+chrM.chrom.sizes L2215-Miopithecus_talapoin-Southern_Talapoin_monkey-Sample4097.2x36mers.Miopithecus_talapoin_HiC+chrM.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py L2406-Urocyon_littoralis-Island_fox-Sample4508-rep1.2x36mers.ASM813125v1_HiC.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 L2406-Urocyon_littoralis-Island_fox-Sample4508-rep1.2x36mers.ASM813125v1_HiC.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chrom.sizes L2406-Urocyon_littoralis-Island_fox-Sample4508-rep1.2x36mers.ASM813125v1_HiC.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py L2407-Urocyon_littoralis-Island_fox-Sample4508-rep2.2x36mers.ASM813125v1_HiC.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 L2407-Urocyon_littoralis-Island_fox-Sample4508-rep2.2x36mers.ASM813125v1_HiC.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC/Urocyon_littoralis_catalinae-Urocyon_littoralis_catalinaei_HiC.chrom.sizes L2407-Urocyon_littoralis-Island_fox-Sample4508-rep2.2x36mers.ASM813125v1_HiC.unique.dedup.MACS-2.1.0_peaks.RPM -RPM -uniqueBAM &