python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L868-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L868-Chinese_hamster_Sample2409_Cricetulus_griseus/L868-Chinese_hamster_Sample2409_Cricetulus_griseus.2x36mers.Cricetulus_griseus-CriGri-PICR_HiC.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L868-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L869-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L869-Chinese_hamster_Sample2409_Cricetulus_griseus/L869-Chinese_hamster_Sample2409_Cricetulus_griseus.2x36mers.Cricetulus_griseus-CriGri-PICR_HiC.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L869-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L868-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L868-Chinese_hamster_Sample2409_Cricetulus_griseus/L868-Chinese_hamster_Sample2409_Cricetulus_griseus.2x36mers.Cricetulus_griseus-CriGri-PICR_HiC.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L868-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L869-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L869-Chinese_hamster_Sample2409_Cricetulus_griseus/L869-Chinese_hamster_Sample2409_Cricetulus_griseus.2x36mers.Cricetulus_griseus-CriGri-PICR_HiC.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Cricetulus_griseus-CriGri-PICR_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L869-Chinese_hamster_Sample2409_Cricetulus_griseus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Felis_nigripes_HiC.NRSE2.0.9.PWMmatch.500bp-L2155-Felis_nigripes-Black-footed_cat-Sample2599.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2155-Felis_nigripes-Black-footed_cat-Sample2599/L2155-Felis_nigripes-Black-footed_cat-Sample2599.Felis_nigripes_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Felis_nigripes_HiC.NRSE2.0.9.PWMmatch.500bp-L2155-Felis_nigripes-Black-footed_cat-Sample2599.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Felis_nigripes_HiC.NRSE2.0.9.PWMmatch.500bp-L2167-Felis_nigripes-Black-footed_cat-Sample2599.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2167-Felis_nigripes-Black-footed_cat-Sample2599/L2167-Felis_nigripes-Black-footed_cat-Sample2599.Felis_nigripes_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Felis_nigripes_HiC.NRSE2.0.9.PWMmatch.500bp-L2167-Felis_nigripes-Black-footed_cat-Sample2599.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Felis_nigripes_HiC.NRSE3.0.9.PWMmatch.500bp-L2155-Felis_nigripes-Black-footed_cat-Sample2599.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2155-Felis_nigripes-Black-footed_cat-Sample2599/L2155-Felis_nigripes-Black-footed_cat-Sample2599.Felis_nigripes_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Felis_nigripes_HiC.NRSE3.0.9.PWMmatch.500bp-L2155-Felis_nigripes-Black-footed_cat-Sample2599.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Felis_nigripes_HiC.NRSE3.0.9.PWMmatch.500bp-L2167-Felis_nigripes-Black-footed_cat-Sample2599.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2167-Felis_nigripes-Black-footed_cat-Sample2599/L2167-Felis_nigripes-Black-footed_cat-Sample2599.Felis_nigripes_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Felis_nigripes_HiC.NRSE3.0.9.PWMmatch.500bp-L2167-Felis_nigripes-Black-footed_cat-Sample2599.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py gorGor4.NRSE2.0.9.PWMmatch.500bp-L2168-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2168-Gorilla_gorilla-Western_Gorilla-Sample4085/L2168-Gorilla_gorilla-Western_Gorilla-Sample4085.2x36mers.gorGor4.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 gorGor4.NRSE2.0.9.PWMmatch.500bp-L2168-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py gorGor4.NRSE2.0.9.PWMmatch.500bp-L2180-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2180-Gorilla_gorilla-Western_Gorilla-Sample4085/L2180-Gorilla_gorilla-Western_Gorilla-Sample4085.2x36mers.gorGor4.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 gorGor4.NRSE2.0.9.PWMmatch.500bp-L2180-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py gorGor4.NRSE3.0.9.PWMmatch.500bp-L2168-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2168-Gorilla_gorilla-Western_Gorilla-Sample4085/L2168-Gorilla_gorilla-Western_Gorilla-Sample4085.2x36mers.gorGor4.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 gorGor4.NRSE3.0.9.PWMmatch.500bp-L2168-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py gorGor4.NRSE3.0.9.PWMmatch.500bp-L2180-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2180-Gorilla_gorilla-Western_Gorilla-Sample4085/L2180-Gorilla_gorilla-Western_Gorilla-Sample4085.2x36mers.gorGor4.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 gorGor4.NRSE3.0.9.PWMmatch.500bp-L2180-Gorilla_gorilla-Western_Gorilla-Sample4085.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py hg38.NRSE2.0.9.PWMmatch.500bp.bed.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-08-human-ATAC-reprocessing/IMR90.pseudoRep.IDR-0.05.gz 0 hg38.NRSE2.0.9.PWMmatch.500bp.bed.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py hg38.NRSE3.0.9.PWMmatch.500bp.bed.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-08-human-ATAC-reprocessing/IMR90.pseudoRep.IDR-0.05.gz 0 hg38.NRSE3.0.9.PWMmatch.500bp.bed.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Mesocricetus_auratus-MesAur1.0_HiC.NRSE2.0.9.PWMmatch.500bp-L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105/L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.2x36mers.MesAur1.0_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Mesocricetus_auratus-MesAur1.0_HiC.NRSE2.0.9.PWMmatch.500bp-L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Mesocricetus_auratus-MesAur1.0_HiC.NRSE2.0.9.PWMmatch.500bp-L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105/L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.2x36mers.MesAur1.0_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Mesocricetus_auratus-MesAur1.0_HiC.NRSE2.0.9.PWMmatch.500bp-L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Mesocricetus_auratus-MesAur1.0_HiC.NRSE3.0.9.PWMmatch.500bp-L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105/L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.2x36mers.MesAur1.0_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Mesocricetus_auratus-MesAur1.0_HiC.NRSE3.0.9.PWMmatch.500bp-L2170-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Mesocricetus_auratus-MesAur1.0_HiC.NRSE3.0.9.PWMmatch.500bp-L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105/L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.2x36mers.MesAur1.0_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Mesocricetus_auratus-MesAur1.0_HiC.NRSE3.0.9.PWMmatch.500bp-L2182-Mesocricetus_auratus-Golden_Syrian_hamster-Sample4105.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Muntiacus_reevesi-CIJ_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1/L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1.2x36mers.CIJ_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Muntiacus_reevesi-CIJ_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Muntiacus_reevesi-CIJ_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2/L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2.2x36mers.CIJ_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Muntiacus_reevesi-CIJ_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Muntiacus_reevesi-CIJ_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1/L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1.2x36mers.CIJ_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Muntiacus_reevesi-CIJ_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2037-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep1.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Muntiacus_reevesi-CIJ_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2/L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2.2x36mers.CIJ_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Muntiacus_reevesi-CIJ_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2038-Brinkley_Chinese_muntjac_10-1-2019-Sample2603-Rep2.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423/L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423/L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424/L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424/L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425/L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425/L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE2.0.9.PWMmatch.500bp-L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423/L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L894-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423/L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L895-Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424/L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L896-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424/L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L897-Myotis_lucifugus_Little_brown_batID_MLUC2_P3_Sample2424.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425/L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L898-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425/L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.2x36mers.Myotis_lucifugus-Myoluc2.0_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Myotis_lucifugus-Myoluc2.0_HiC.NRSE3.0.9.PWMmatch.500bp-L899-Myotis_lucifugus_Little_brown_batID_MLUC2_P1_Sample2425.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Papio_papio-Papio_papio_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2222-Papio_papio-Guinea_baboon-Sample3915.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2222-Papio_papio-Guinea_baboon-Sample3915/L2222-Papio_papio-Guinea_baboon-Sample3915.2x36mers.Papio_papio_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Papio_papio-Papio_papio_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2222-Papio_papio-Guinea_baboon-Sample3915.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Papio_papio-Papio_papio_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2234-Papio_papio-Guinea_baboon-Sample3915.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2234-Papio_papio-Guinea_baboon-Sample3915/L2234-Papio_papio-Guinea_baboon-Sample3915.2x36mers.Papio_papio_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Papio_papio-Papio_papio_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2234-Papio_papio-Guinea_baboon-Sample3915.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Papio_papio-Papio_papio_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2222-Papio_papio-Guinea_baboon-Sample3915.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2222-Papio_papio-Guinea_baboon-Sample3915/L2222-Papio_papio-Guinea_baboon-Sample3915.2x36mers.Papio_papio_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Papio_papio-Papio_papio_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2222-Papio_papio-Guinea_baboon-Sample3915.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Papio_papio-Papio_papio_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2234-Papio_papio-Guinea_baboon-Sample3915.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2234-Papio_papio-Guinea_baboon-Sample3915/L2234-Papio_papio-Guinea_baboon-Sample3915.2x36mers.Papio_papio_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Papio_papio-Papio_papio_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2234-Papio_papio-Guinea_baboon-Sample3915.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py pecr10X_v2_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L872-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus/L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.2x36mers.pecr10X_v2_HiC+chrM.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 pecr10X_v2_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L872-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py pecr10X_v2_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L873-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus/L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.2x36mers.pecr10X_v2_HiC+chrM.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 pecr10X_v2_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L873-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py pecr10X_v2_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L872-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus/L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.2x36mers.pecr10X_v2_HiC+chrM.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 pecr10X_v2_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L872-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py pecr10X_v2_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L873-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus/L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.2x36mers.pecr10X_v2_HiC+chrM.unique.nochrM.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 pecr10X_v2_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L873-Cactus_mouse_Sample2404_Peromyscus_eremicus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Peer2.0.1.NRSE2.0.9.PWMmatch.500bp-L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L872-Cactus_mouse_Sample2404_Peromyscus_eremicus/L872-Cactus_mouse_Sample2404_Peromyscus_eremicus.2x36mers.Peer2.0.1.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Peer2.0.1.NRSE2.0.9.PWMmatch.500bp-L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Peer2.0.1.NRSE2.0.9.PWMmatch.500bp-L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L873-Cactus_mouse_Sample2404_Peromyscus_eremicus/L873-Cactus_mouse_Sample2404_Peromyscus_eremicus.2x36mers.Peer2.0.1.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Peer2.0.1.NRSE2.0.9.PWMmatch.500bp-L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Peer2.0.1.NRSE3.0.9.PWMmatch.500bp-L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L872-Cactus_mouse_Sample2404_Peromyscus_eremicus/L872-Cactus_mouse_Sample2404_Peromyscus_eremicus.2x36mers.Peer2.0.1.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Peer2.0.1.NRSE3.0.9.PWMmatch.500bp-L890-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Peer2.0.1.NRSE3.0.9.PWMmatch.500bp-L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L873-Cactus_mouse_Sample2404_Peromyscus_eremicus/L873-Cactus_mouse_Sample2404_Peromyscus_eremicus.2x36mers.Peer2.0.1.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM.gz 0 Peer2.0.1.NRSE3.0.9.PWMmatch.500bp-L891-Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Saimiri_boliviensis-saiBolDis_HiC.NRSE2.0.9.PWMmatch.500bp-L886-Squirrel_monkey_ID_2655_Sample2418.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L886-Squirrel_monkey_ID_2655_Sample2418/L886-Squirrel_monkey_ID_2655_Sample2418.2x36mers.Saimiri_boliviensis-saiBolDis_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Saimiri_boliviensis-saiBolDis_HiC.NRSE2.0.9.PWMmatch.500bp-L886-Squirrel_monkey_ID_2655_Sample2418.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Saimiri_boliviensis-saiBolDis_HiC.NRSE2.0.9.PWMmatch.500bp-L887-Squirrel_monkey_ID_2655_Sample2418.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L887-Squirrel_monkey_ID_2655_Sample2418/L887-Squirrel_monkey_ID_2655_Sample2418.2x36mers.Saimiri_boliviensis-saiBolDis_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Saimiri_boliviensis-saiBolDis_HiC.NRSE2.0.9.PWMmatch.500bp-L887-Squirrel_monkey_ID_2655_Sample2418.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Saimiri_boliviensis-saiBolDis_HiC.NRSE3.0.9.PWMmatch.500bp-L886-Squirrel_monkey_ID_2655_Sample2418.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L886-Squirrel_monkey_ID_2655_Sample2418/L886-Squirrel_monkey_ID_2655_Sample2418.2x36mers.Saimiri_boliviensis-saiBolDis_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Saimiri_boliviensis-saiBolDis_HiC.NRSE3.0.9.PWMmatch.500bp-L886-Squirrel_monkey_ID_2655_Sample2418.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Saimiri_boliviensis-saiBolDis_HiC.NRSE3.0.9.PWMmatch.500bp-L887-Squirrel_monkey_ID_2655_Sample2418.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L887-Squirrel_monkey_ID_2655_Sample2418/L887-Squirrel_monkey_ID_2655_Sample2418.2x36mers.Saimiri_boliviensis-saiBolDis_HiC.unique.dedup.MACS2-PE_peaks.narrowPeak.RPM 0 Saimiri_boliviensis-saiBolDis_HiC.NRSE3.0.9.PWMmatch.500bp-L887-Squirrel_monkey_ID_2655_Sample2418.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Tapirus_terrestris_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2/L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2.2x36mers.Tapirus_terrestris_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Tapirus_terrestris_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Tapirus_terrestris_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L874-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L874-Brazilian_tapir_Sample2410_Tapirus_terrestris/L874-Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers.Tapirus_terrestris_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Tapirus_terrestris_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L874-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Tapirus_terrestris_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L875-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L875-Brazilian_tapir_Sample2410_Tapirus_terrestris/L875-Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers.Tapirus_terrestris_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Tapirus_terrestris_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L875-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Tapirus_terrestris_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2/L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2.2x36mers.Tapirus_terrestris_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Tapirus_terrestris_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2012-South_American_tapir-Tapirus_terrestris-Sample2876-Rep2.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Tapirus_terrestris_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L874-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L874-Brazilian_tapir_Sample2410_Tapirus_terrestris/L874-Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers.Tapirus_terrestris_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Tapirus_terrestris_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L874-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Tapirus_terrestris_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L875-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L875-Brazilian_tapir_Sample2410_Tapirus_terrestris/L875-Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers.Tapirus_terrestris_HiC.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Tapirus_terrestris_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L875-Brazilian_tapir_Sample2410_Tapirus_terrestris.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Ursus_americanus-ASM334442v1_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2033-American_Black_Bear-Sample2601-Rep1.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2033-American_Black_Bear-Sample2601-Rep1/L2033-American_Black_Bear-Sample2601-Rep1.2x36mers.ASM334442v1_HiC-DNAZoo.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Ursus_americanus-ASM334442v1_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2033-American_Black_Bear-Sample2601-Rep1.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Ursus_americanus-ASM334442v1_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2034-American_Black_Bear-Sample2601-Rep2.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2034-American_Black_Bear-Sample2601-Rep2/L2034-American_Black_Bear-Sample2601-Rep2.2x36mers.ASM334442v1_HiC-DNAZoo.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Ursus_americanus-ASM334442v1_HiC+chrM.NRSE2.0.9.PWMmatch.500bp-L2034-American_Black_Bear-Sample2601-Rep2.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Ursus_americanus-ASM334442v1_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2033-American_Black_Bear-Sample2601-Rep1.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2033-American_Black_Bear-Sample2601-Rep1/L2033-American_Black_Bear-Sample2601-Rep1.2x36mers.ASM334442v1_HiC-DNAZoo.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Ursus_americanus-ASM334442v1_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2033-American_Black_Bear-Sample2601-Rep1.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Ursus_americanus-ASM334442v1_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2034-American_Black_Bear-Sample2601-Rep2.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2034-American_Black_Bear-Sample2601-Rep2/L2034-American_Black_Bear-Sample2601-Rep2.2x36mers.ASM334442v1_HiC-DNAZoo.unique.nochrM.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Ursus_americanus-ASM334442v1_HiC+chrM.NRSE3.0.9.PWMmatch.500bp-L2034-American_Black_Bear-Sample2601-Rep2.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Xerus_rutilus-Xerus_rutilus_HiC.NRSE2.0.9.PWMmatch.500bp-L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593/L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.2x36mers.Xerus_rutilus.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Xerus_rutilus-Xerus_rutilus_HiC.NRSE2.0.9.PWMmatch.500bp-L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Xerus_rutilus-Xerus_rutilus_HiC.NRSE2.0.9.PWMmatch.500bp-L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593/L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.2x36mers.Xerus_rutilus.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Xerus_rutilus-Xerus_rutilus_HiC.NRSE2.0.9.PWMmatch.500bp-L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Xerus_rutilus-Xerus_rutilus_HiC.NRSE3.0.9.PWMmatch.500bp-L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593/L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.2x36mers.Xerus_rutilus.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Xerus_rutilus-Xerus_rutilus_HiC.NRSE3.0.9.PWMmatch.500bp-L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM-vs-ATAC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py Xerus_rutilus-Xerus_rutilus_HiC.NRSE3.0.9.PWMmatch.500bp-L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM 0 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593/L2144-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.2x36mers.Xerus_rutilus.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM 0 Xerus_rutilus-Xerus_rutilus_HiC.NRSE3.0.9.PWMmatch.500bp-L2156-Xerus_rutilus-Unstriped_ground_squirrel-Sample2593.RPM-vs-ATAC