/oak/stanford/groups/akundaje/marinovg/programs/bcl2fastq2-v2.20/export/bin/bcl2fastq -p 20 --mask-short-adapter-reads 0 --barcode-mismatches 0 --ignore-missing-filter --min-log-level WARNING --minimum-trimmed-read-length 36 --runfolder-dir /oak/stanford/groups/wjg/seqruns/220620_NB551514_0789_AHWGTHBGXL --output-dir . --stats-dir bcl2fastq-stats --reports-dir bcl2fastq-reports --sample-sheet /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2022-06-20-NextSeq-run-Sam-lung/SampleSheet-ATAC.csv