#!/bin/bash
#SBATCH --job-name=zMEGA-1
#SBATCH --output=zMEGA.1.out
#SBATCH --error=zMEGA.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
module load java; java -Xmx40G -jar juicer_tools.jar pre -q 1 mega/aligned/merged_nodups.txt inter.hic mm10