Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB901KXQ -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB901KXQ -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  208,185,348
 Normal Paired: 124,346,678 (59.73%)
 Chimeric Paired: 53,075,954 (25.49%)
 Chimeric Ambiguous: 23,732,869 (11.40%)
 Unmapped: 7,029,847 (3.38%)
 Ligation Motif Present: 148,392,695 (71.28%)
Alignable (Normal+Chimeric Paired): 177,422,632 (85.22%)
Unique Reads: 172,360,499 (82.79%)
PCR Duplicates: 5,053,864 (2.43%)
Optical Duplicates: 8,269 (0.00%)
Library Complexity Estimate: 3,054,615,464
Intra-fragment Reads: 1,581,390 (0.76% / 0.92%)
Below MAPQ Threshold: 35,706,413 (17.15% / 20.72%)
Hi-C Contacts: 135,072,696 (64.88% / 78.37%)
 Ligation Motif Present: 78,839,623  (37.87% / 45.74%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 27,375,113  (13.15% / 15.88%)
Intra-chromosomal: 107,697,583  (51.73% / 62.48%)
Short Range (<20Kb): 41,303,839  (19.84% / 23.96%)
Long Range (>20Kb): 66,393,373  (31.89% / 38.52%)