Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB847UXH -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB847UXH -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  222,590,409
 Normal Paired: 133,920,111 (60.16%)
 Chimeric Paired: 57,257,983 (25.72%)
 Chimeric Ambiguous: 24,271,601 (10.90%)
 Unmapped: 7,140,714 (3.21%)
 Ligation Motif Present: 155,842,707 (70.01%)
Alignable (Normal+Chimeric Paired): 191,178,094 (85.89%)
Unique Reads: 185,325,034 (83.26%)
PCR Duplicates: 5,836,909 (2.62%)
Optical Duplicates: 16,151 (0.01%)
Library Complexity Estimate: 3,066,278,468
Intra-fragment Reads: 1,907,503 (0.86% / 1.03%)
Below MAPQ Threshold: 54,482,135 (24.48% / 29.40%)
Hi-C Contacts: 128,935,396 (57.92% / 69.57%)
 Ligation Motif Present: 74,712,046  (33.56% / 40.31%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 25,136,403  (11.29% / 13.56%)
Intra-chromosomal: 103,798,993  (46.63% / 56.01%)
Short Range (<20Kb): 41,434,465  (18.61% / 22.36%)
Long Range (>20Kb): 62,364,133  (28.02% / 33.65%)