Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB498BDB -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB498BDB -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  83,596,873
 Normal Paired: 58,789,209 (70.32%)
 Chimeric Paired: 17,156,711 (20.52%)
 Chimeric Ambiguous: 5,413,921 (6.48%)
 Unmapped: 2,237,032 (2.68%)
 Ligation Motif Present: 46,976,227 (56.19%)
Alignable (Normal+Chimeric Paired): 75,945,920 (90.85%)
Unique Reads: 48,751,848 (58.32%)
PCR Duplicates: 27,183,802 (32.52%)
Optical Duplicates: 10,270 (0.01%)
Library Complexity Estimate: 78,855,310
Intra-fragment Reads: 832,176 (1.00% / 1.71%)
Below MAPQ Threshold: 10,751,556 (12.86% / 22.05%)
Hi-C Contacts: 37,168,116 (44.46% / 76.24%)
 Ligation Motif Present: 16,614,418  (19.87% / 34.08%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,714,360  (6.84% / 11.72%)
Intra-chromosomal: 31,453,756  (37.63% / 64.52%)
Short Range (<20Kb): 12,236,030  (14.64% / 25.10%)
Long Range (>20Kb): 19,217,696  (22.99% / 39.42%)