Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB074JYK -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB074JYK -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  158,555,241
 Normal Paired: 104,775,614 (66.08%)
 Chimeric Paired: 37,803,799 (23.84%)
 Chimeric Ambiguous: 12,792,745 (8.07%)
 Unmapped: 3,183,083 (2.01%)
 Ligation Motif Present: 90,751,506 (57.24%)
Alignable (Normal+Chimeric Paired): 142,579,413 (89.92%)
Unique Reads: 138,263,819 (87.20%)
PCR Duplicates: 4,304,520 (2.71%)
Optical Duplicates: 11,074 (0.01%)
Library Complexity Estimate: 2,313,209,506
Intra-fragment Reads: 7,690,700 (4.85% / 5.56%)
Below MAPQ Threshold: 39,816,858 (25.11% / 28.80%)
Hi-C Contacts: 90,756,261 (57.24% / 65.64%)
 Ligation Motif Present: 43,569,946  (27.48% / 31.51%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,686,353  (8.63% / 9.90%)
Intra-chromosomal: 77,069,908  (48.61% / 55.74%)
Short Range (<20Kb): 31,513,657  (19.88% / 22.79%)
Long Range (>20Kb): 45,556,211  (28.73% / 32.95%)