Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB018CFF -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB018CFF -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  221,873,408
 Normal Paired: 132,051,968 (59.52%)
 Chimeric Paired: 54,917,261 (24.75%)
 Chimeric Ambiguous: 24,803,529 (11.18%)
 Unmapped: 10,100,650 (4.55%)
 Ligation Motif Present: 154,406,618 (69.59%)
Alignable (Normal+Chimeric Paired): 186,969,229 (84.27%)
Unique Reads: 180,065,766 (81.16%)
PCR Duplicates: 6,895,228 (3.11%)
Optical Duplicates: 8,235 (0.00%)
Library Complexity Estimate: 2,471,970,344
Intra-fragment Reads: 1,639,977 (0.74% / 0.91%)
Below MAPQ Threshold: 38,133,647 (17.19% / 21.18%)
Hi-C Contacts: 140,292,142 (63.23% / 77.91%)
 Ligation Motif Present: 80,634,052  (36.34% / 44.78%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 33,992,288  (15.32% / 18.88%)
Intra-chromosomal: 106,299,854  (47.91% / 59.03%)
Short Range (<20Kb): 45,326,862  (20.43% / 25.17%)
Long Range (>20Kb): 60,972,330  (27.48% / 33.86%)