Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB916KIH -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB916KIH -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  147,914,631
 Normal Paired: 134,600,012 (91.00%)
 Chimeric Paired: 10,180,909 (6.88%)
 Chimeric Ambiguous: 1,482,986 (1.00%)
 Unmapped: 1,650,724 (1.12%)
 Ligation Motif Present: 16,516 (0.01%)
Alignable (Normal+Chimeric Paired): 144,780,921 (97.88%)
Unique Reads: 142,303,214 (96.21%)
PCR Duplicates: 2,477,707 (1.68%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 4,181,623,749
Intra-fragment Reads: 8,241,888 (5.57% / 5.79%)
Below MAPQ Threshold: 31,274,235 (21.14% / 21.98%)
Hi-C Contacts: 102,787,091 (69.49% / 72.23%)
 Ligation Motif Present: 12,838  (0.01% / 0.01%)
 3' Bias (Long Range): 48% - 52%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 19,742,316  (13.35% / 13.87%)
Intra-chromosomal: 83,044,775  (56.14% / 58.36%)
Short Range (<20Kb): 15,803,040  (10.68% / 11.11%)
Long Range (>20Kb): 67,241,725  (45.46% / 47.25%)