Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB825MAP -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB825MAP -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  289,367,968
 Normal Paired: 193,658,162 (66.92%)
 Chimeric Paired: 68,810,398 (23.78%)
 Chimeric Ambiguous: 18,271,039 (6.31%)
 Unmapped: 8,628,369 (2.98%)
 Ligation Motif Present: 105,397,128 (36.42%)
Alignable (Normal+Chimeric Paired): 262,468,560 (90.70%)
Unique Reads: 247,675,072 (85.59%)
PCR Duplicates: 14,767,114 (5.10%)
Optical Duplicates: 26,374 (0.01%)
Library Complexity Estimate: 2,243,743,763
Intra-fragment Reads: 4,967,094 (1.72% / 2.01%)
Below MAPQ Threshold: 32,022,139 (11.07% / 12.93%)
Hi-C Contacts: 210,685,839 (72.81% / 85.07%)
 Ligation Motif Present: 59,747,630  (20.65% / 24.12%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 36,248,353  (12.53% / 14.64%)
Intra-chromosomal: 174,437,486  (60.28% / 70.43%)
Short Range (<20Kb): 64,368,747  (22.24% / 25.99%)
Long Range (>20Kb): 110,067,747  (38.04% / 44.44%)