Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB647AML -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB647AML -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  26,448,232
 Normal Paired: 19,841,229 (75.02%)
 Chimeric Paired: 4,944,090 (18.69%)
 Chimeric Ambiguous: 1,058,606 (4.00%)
 Unmapped: 604,307 (2.28%)
 Ligation Motif Present: 11,787,936 (44.57%)
Alignable (Normal+Chimeric Paired): 24,785,319 (93.71%)
Unique Reads: 24,611,990 (93.06%)
PCR Duplicates: 162,357 (0.61%)
Optical Duplicates: 10,972 (0.04%)
Library Complexity Estimate: 1,881,913,943
Intra-fragment Reads: 143,280 (0.54% / 0.58%)
Below MAPQ Threshold: 6,037,073 (22.83% / 24.53%)
Hi-C Contacts: 18,431,637 (69.69% / 74.89%)
 Ligation Motif Present: 6,263,580  (23.68% / 25.45%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,214,955  (12.16% / 13.06%)
Intra-chromosomal: 15,216,682  (57.53% / 61.83%)
Short Range (<20Kb): 4,469,203  (16.90% / 18.16%)
Long Range (>20Kb): 10,747,467  (40.64% / 43.67%)