Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB512HIP -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB512HIP -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  276,809,208
 Normal Paired: 201,218,286 (72.69%)
 Chimeric Paired: 43,016,559 (15.54%)
 Chimeric Ambiguous: 13,306,774 (4.81%)
 Unmapped: 19,267,589 (6.96%)
 Ligation Motif Present: 116,563,097 (42.11%)
Alignable (Normal+Chimeric Paired): 244,234,845 (88.23%)
Unique Reads: 231,774,677 (83.73%)
PCR Duplicates: 12,200,721 (4.41%)
Optical Duplicates: 259,447 (0.09%)
Library Complexity Estimate: 2,357,342,168
Intra-fragment Reads: 1,860,377 (0.67% / 0.80%)
Below MAPQ Threshold: 32,322,599 (11.68% / 13.95%)
Hi-C Contacts: 197,591,701 (71.38% / 85.25%)
 Ligation Motif Present: 66,154,586  (23.90% / 28.54%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 32,005,907  (11.56% / 13.81%)
Intra-chromosomal: 165,585,794  (59.82% / 71.44%)
Short Range (<20Kb): 55,527,102  (20.06% / 23.96%)
Long Range (>20Kb): 110,058,602  (39.76% / 47.49%)