Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB476ZIC -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB476ZIC -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  252,725,458
 Normal Paired: 183,890,963 (72.76%)
 Chimeric Paired: 39,570,746 (15.66%)
 Chimeric Ambiguous: 11,855,609 (4.69%)
 Unmapped: 17,408,140 (6.89%)
 Ligation Motif Present: 113,320,582 (44.84%)
Alignable (Normal+Chimeric Paired): 223,461,709 (88.42%)
Unique Reads: 207,659,729 (82.17%)
PCR Duplicates: 15,576,598 (6.16%)
Optical Duplicates: 225,382 (0.09%)
Library Complexity Estimate: 1,524,346,692
Intra-fragment Reads: 1,001,591 (0.40% / 0.48%)
Below MAPQ Threshold: 52,390,799 (20.73% / 25.23%)
Hi-C Contacts: 154,267,339 (61.04% / 74.29%)
 Ligation Motif Present: 54,976,764  (21.75% / 26.47%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 20,335,219  (8.05% / 9.79%)
Intra-chromosomal: 133,932,120  (53.00% / 64.50%)
Short Range (<20Kb): 45,843,595  (18.14% / 22.08%)
Long Range (>20Kb): 88,088,458  (34.86% / 42.42%)