Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB126OSS -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB126OSS -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  331,634,582
 Normal Paired: 206,399,677 (62.24%)
 Chimeric Paired: 89,285,049 (26.92%)
 Chimeric Ambiguous: 27,858,983 (8.40%)
 Unmapped: 8,090,873 (2.44%)
 Ligation Motif Present: 142,704,492 (43.03%)
Alignable (Normal+Chimeric Paired): 295,684,726 (89.16%)
Unique Reads: 280,229,484 (84.50%)
PCR Duplicates: 15,429,348 (4.65%)
Optical Duplicates: 25,894 (0.01%)
Library Complexity Estimate: 2,733,288,376
Intra-fragment Reads: 7,595,185 (2.29% / 2.71%)
Below MAPQ Threshold: 71,552,764 (21.58% / 25.53%)
Hi-C Contacts: 201,081,535 (60.63% / 71.76%)
 Ligation Motif Present: 69,045,419  (20.82% / 24.64%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 29,981,989  (9.04% / 10.70%)
Intra-chromosomal: 171,099,546  (51.59% / 61.06%)
Short Range (<20Kb): 74,110,723  (22.35% / 26.45%)
Long Range (>20Kb): 96,988,170  (29.25% / 34.61%)