Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB068PBQ -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB068PBQ -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  211,211,902
 Normal Paired: 92,922,121 (43.99%)
 Chimeric Paired: 96,100,603 (45.50%)
 Chimeric Ambiguous: 17,470,045 (8.27%)
 Unmapped: 4,719,133 (2.23%)
 Ligation Motif Present: 155,647,229 (73.69%)
Alignable (Normal+Chimeric Paired): 189,022,724 (89.49%)
Unique Reads: 165,269,764 (78.25%)
PCR Duplicates: 23,463,248 (11.11%)
Optical Duplicates: 289,712 (0.14%)
Library Complexity Estimate: 694,753,800
Intra-fragment Reads: 372,018 (0.18% / 0.23%)
Below MAPQ Threshold: 32,194,280 (15.24% / 19.48%)
Hi-C Contacts: 132,703,466 (62.83% / 80.30%)
 Ligation Motif Present: 66,879,699  (31.66% / 40.47%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 18,071,484  (8.56% / 10.93%)
Intra-chromosomal: 114,631,982  (54.27% / 69.36%)
Short Range (<20Kb): 33,621,619  (15.92% / 20.34%)
Long Range (>20Kb): 81,010,315  (38.35% / 49.02%)