Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Hi-C-reprocessing-Macropus_eugenii/juicer-Macropus_eugenii_DNA_Zoo_Sample0158 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Hi-C-reprocessing-Macropus_eugenii/juicer-Macropus_eugenii_DNA_Zoo_Sample0158 -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macropus_eugenii-me-1k-DNAZoo/Macropus_eugenii-me-1k.main_chromosomes_only.chrom.sizes -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macropus_eugenii-me-1k-DNAZoo/bwa-indexes/Macropus_eugenii-me-1k.fa                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  359,852,614
 Normal Paired: 245,118,873 (68.12%)
 Chimeric Paired: 105,878,526 (29.42%)
 Chimeric Ambiguous: 7,182,126 (2.00%)
 Unmapped: 1,673,089 (0.46%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 350,997,399 (97.54%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 12,873,159 (3.58% / 5.11%)
Hi-C Contacts: 238,940,209 (66.40% / 94.89%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 38,805,418  (10.78% / 15.41%)
Intra-chromosomal: 200,134,791  (55.62% / 79.48%)
Short Range (<20Kb): 3,448,361  (0.96% / 1.37%)
Long Range (>20Kb): 44,232,056  (12.29% / 17.57%)