Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-06-23-Hi-C-reprocessing-Ursus_americanus/juicer-2021-Ursus_americanus_DNA_Zoo_Sample0158 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-06-23-Hi-C-reprocessing-Ursus_americanus/juicer-2021-Ursus_americanus_DNA_Zoo_Sample0158 -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Ursus_americanus-ASM334442v1_HiC-DNAZoo/Ursus_americanus-ASM334442v1_HiC+chrM.chrom.sizes -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Ursus_americanus-ASM334442v1_HiC-DNAZoo/bwa-indexes/Ursus_americanus-ASM334442v1_HiC+chrM.fa                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  255,881,830
 Normal Paired: 198,069,753 (77.41%)
 Chimeric Paired: 47,020,920 (18.38%)
 Chimeric Ambiguous: 8,493,707 (3.32%)
 Unmapped: 2,297,450 (0.90%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 245,090,673 (95.78%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 14,286,074 (5.58% / 8.12%)
Hi-C Contacts: 161,701,147 (63.19% / 91.88%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 19,615,755  (7.67% / 11.15%)
Intra-chromosomal: 142,085,392  (55.53% / 80.74%)
Short Range (<20Kb): 2,115,603  (0.83% / 1.20%)
Long Range (>20Kb): 16,997,718  (6.64% / 9.66%)