Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-02-21-reprocessing-for-Eldon-Emberley-Myotis/juicer-Myotis_lucifugus-DNAZoo_Sample2425 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-02-21-reprocessing-for-Eldon-Emberley-Myotis/juicer-Myotis_lucifugus-DNAZoo_Sample2425 -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Myotis_lucifugus-Myoluc2.0_HiC/Myotis_lucifugus-Myoluc2.0_HiC-subset.chrom.sizes -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Myotis_lucifugus-Myoluc2.0_HiC/bwa-indexes/Myotis_lucifugus-Myoluc2.0_HiC.fa                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  188,050,168
 Normal Paired: 84,193,059 (44.77%)
 Chimeric Paired: 70,566,248 (37.53%)
 Chimeric Ambiguous: 29,611,760 (15.75%)
 Unmapped: 3,679,101 (1.96%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 154,759,307 (82.30%)
Unique Reads: 109,511,239 (58.24%)
PCR Duplicates: 45,248,068 (24.06%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 210,067,050
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 17,264,418 (9.18% / 15.76%)
Hi-C Contacts: 92,246,821 (49.05% / 84.24%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,262,051  (7.05% / 12.11%)
Intra-chromosomal: 78,984,770  (42.00% / 72.12%)
Short Range (<20Kb): 46,065,082  (24.50% / 42.06%)
Long Range (>20Kb): 32,887,734  (17.49% / 30.03%)