java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq0 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq0 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq0 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq0 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq0 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq0 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq1 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq1 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq1 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq1 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq1 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq1 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq10 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq10 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq10 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq10 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq10 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq10 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq100 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq100 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq100 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq100 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq100 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq100 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq101 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq101 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq101 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq101 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq101 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq101 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq102 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq102 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq102 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq102 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq102 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq102 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq103 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq103 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq103 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq103 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq103 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq103 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq104 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq104 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq104 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq104 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq104 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq104 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq105 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq105 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq105 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq105 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq105 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq105 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq106 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq106 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq106 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq106 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq106 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq106 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq107 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq107 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq107 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq107 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq107 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq107 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq108 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq108 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq108 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq108 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq108 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq108 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq109 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq109 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq109 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq109 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq109 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq109 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq11 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq11 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq11 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq11 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq11 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq11 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq110 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq110 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq110 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq110 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq110 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq110 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq111 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq111 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq111 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq111 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq111 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq111 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq112 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq112 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq112 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq112 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq112 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq112 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq113 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq113 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq113 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq113 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq113 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq113 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq114 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq114 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq114 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq114 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq114 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq114 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq115 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq115 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq115 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq115 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq115 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq115 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq116 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq116 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq116 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq116 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq116 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq116 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq117 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq117 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq117 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq117 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq117 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq117 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq118 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq118 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq118 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq118 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq118 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq118 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq119 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq119 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq119 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq119 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq119 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq119 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq12 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq12 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq12 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq12 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq12 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq12 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq120 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq120 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq120 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq120 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq120 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq120 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq121 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq121 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq121 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq121 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq121 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq121 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq122 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq122 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq122 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq122 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq122 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq122 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq123 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq123 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq123 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq123 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq123 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq123 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq124 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq124 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq124 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq124 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq124 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq124 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq125 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq125 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq125 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq125 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq125 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq125 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq126 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq126 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq126 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq126 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq126 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq126 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq127 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq127 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq127 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq127 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq127 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq127 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq128 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq128 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq128 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq128 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq128 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq128 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq129 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq129 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq129 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq129 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq129 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq129 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq13 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq13 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq13 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq13 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq13 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq13 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq130 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq130 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq130 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq130 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq130 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq130 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq131 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq131 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq131 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq131 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq131 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq131 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq132 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq132 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq132 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq132 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq132 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq132 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq133 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq133 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq133 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq133 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq133 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq133 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq134 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq134 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq134 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq134 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq134 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq134 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq135 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq135 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq135 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq135 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq135 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq135 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq136 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq136 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq136 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq136 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq136 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq136 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq137 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq137 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq137 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq137 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq137 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq137 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq138 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq138 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq138 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq138 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq138 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq138 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq139 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq139 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq139 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq139 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq139 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq139 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq14 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq14 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq14 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq14 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq14 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq14 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq140 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq140 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq140 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq140 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq140 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq140 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq141 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq141 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq141 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq141 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq141 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq141 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq142 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq142 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq142 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq142 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq142 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq142 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq143 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq143 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq143 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq143 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq143 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq143 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq144 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq144 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq144 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq144 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq144 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq144 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq145 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq145 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq145 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq145 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq145 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq145 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq146 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq146 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq146 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq146 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq146 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq146 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq147 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq147 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq147 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq147 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq147 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq147 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq148 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq148 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq148 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq148 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq148 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq148 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq149 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq149 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq149 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq149 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq149 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq149 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq15 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq15 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq15 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq15 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq15 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq15 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq150 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq150 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq150 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq150 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq150 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq150 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq151 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq151 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq151 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq151 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq151 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq151 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq152 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq152 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq152 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq152 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq152 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq152 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq153 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq153 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq153 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq153 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq153 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq153 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq154 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq154 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq154 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq154 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq154 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq154 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq155 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq155 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq155 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq155 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq155 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq155 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq156 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq156 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq156 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq156 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq156 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq156 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq157 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq157 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq157 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq157 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq157 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq157 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq158 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq158 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq158 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq158 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq158 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq158 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq159 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq159 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq159 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq159 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq159 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq159 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq16 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq16 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq16 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq16 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq16 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq16 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq160 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq160 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq160 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq160 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq160 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq160 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq161 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq161 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq161 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq161 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq161 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq161 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq162 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq162 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq162 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq162 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq162 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq162 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq163 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq163 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq163 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq163 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq163 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq163 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq164 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq164 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq164 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq164 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq164 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq164 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq165 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq165 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq165 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq165 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq165 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq165 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq166 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq166 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq166 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq166 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq166 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq166 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq167 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq167 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq167 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq167 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq167 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq167 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq168 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq168 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq168 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq168 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq168 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq168 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq169 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq169 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq169 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq169 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq169 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq169 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq17 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq17 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq17 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq17 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq17 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq17 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq170 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq170 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq170 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq170 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq170 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq170 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq171 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq171 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq171 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq171 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq171 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq171 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq172 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq172 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq172 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq172 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq172 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq172 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq173 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq173 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq173 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq173 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq173 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq173 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq174 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq174 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq174 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq174 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq174 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq174 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq18 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq18 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq18 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq18 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq18 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq18 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq19 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq19 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq19 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq19 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq19 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq19 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq2 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq2 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq2 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq2 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq2 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq2 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq20 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq20 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq20 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq20 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq20 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq20 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq21 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq21 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq21 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq21 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq21 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq21 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq22 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq22 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq22 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq22 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq22 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq22 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq23 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq23 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq23 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq23 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq23 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq23 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq24 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq24 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq24 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq24 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq24 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq24 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq25 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq25 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq25 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq25 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq25 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq25 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq26 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq26 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq26 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq26 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq26 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq26 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq27 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq27 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq27 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq27 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq27 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq27 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq28 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq28 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq28 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq28 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq28 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq28 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq29 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq29 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq29 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq29 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq29 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq29 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq3 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq3 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq3 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq3 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq3 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq3 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq30 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq30 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq30 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq30 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq30 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq30 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq31 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq31 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq31 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq31 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq31 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq31 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq32 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq32 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq32 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq32 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq32 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq32 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq33 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq33 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq33 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq33 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq33 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq33 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq34 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq34 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq34 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq34 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq34 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq34 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq35 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq35 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq35 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq35 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq35 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq35 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq36 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq36 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq36 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq36 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq36 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq36 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq37 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq37 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq37 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq37 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq37 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq37 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq38 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq38 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq38 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq38 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq38 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq38 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq39 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq39 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq39 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq39 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq39 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq39 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq4 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq4 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq4 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq4 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq4 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq4 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq40 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq40 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq40 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq40 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq40 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq40 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq41 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq41 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq41 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq41 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq41 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq41 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq42 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq42 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq42 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq42 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq42 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq42 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq43 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq43 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq43 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq43 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq43 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq43 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq44 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq44 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq44 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq44 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq44 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq44 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq45 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq45 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq45 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq45 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq45 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq45 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq46 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq46 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq46 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq46 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq46 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq46 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq47 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq47 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq47 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq47 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq47 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq47 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq48 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq48 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq48 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq48 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq48 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq48 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq49 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq49 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq49 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq49 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq49 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq49 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq5 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq5 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq5 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq5 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq5 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq5 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq50 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq50 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq50 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq50 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq50 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq50 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq51 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq51 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq51 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq51 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq51 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq51 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq52 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq52 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq52 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq52 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq52 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq52 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq53 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq53 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq53 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq53 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq53 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq53 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq54 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq54 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq54 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq54 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq54 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq54 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq55 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq55 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq55 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq55 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq55 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq55 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq56 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq56 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq56 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq56 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq56 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq56 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq57 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq57 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq57 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq57 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq57 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq57 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq58 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq58 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq58 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq58 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq58 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq58 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq59 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq59 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq59 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq59 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq59 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq59 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq6 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq6 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq6 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq6 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq6 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq6 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq60 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq60 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq60 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq60 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq60 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq60 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq61 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq61 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq61 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq61 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq61 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq61 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq62 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq62 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq62 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq62 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq62 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq62 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq63 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq63 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq63 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq63 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq63 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq63 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq64 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq64 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq64 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq64 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq64 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq64 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq65 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq65 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq65 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq65 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq65 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq65 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq66 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq66 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq66 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq66 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq66 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq66 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq67 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq67 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq67 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq67 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq67 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq67 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq68 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq68 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq68 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq68 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq68 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq68 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq69 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq69 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq69 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq69 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq69 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq69 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq7 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq7 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq7 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq7 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq7 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq7 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq70 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq70 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq70 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq70 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq70 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq70 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq71 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq71 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq71 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq71 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq71 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq71 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq72 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq72 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq72 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq72 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq72 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq72 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq73 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq73 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq73 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq73 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq73 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq73 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq74 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq74 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq74 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq74 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq74 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq74 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq75 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq75 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq75 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq75 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq75 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq75 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq76 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq76 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq76 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq76 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq76 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq76 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq77 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq77 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq77 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq77 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq77 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq77 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq78 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq78 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq78 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq78 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq78 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq78 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq79 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq79 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq79 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq79 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq79 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq79 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq8 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq8 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq8 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq8 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq8 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq8 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq80 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq80 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq80 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq80 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq80 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq80 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq81 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq81 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq81 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq81 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq81 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq81 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq82 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq82 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq82 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq82 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq82 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq82 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq83 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq83 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq83 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq83 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq83 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq83 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq84 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq84 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq84 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq84 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq84 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq84 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq85 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq85 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq85 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq85 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq85 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq85 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq86 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq86 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq86 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq86 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq86 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq86 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq87 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq87 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq87 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq87 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq87 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq87 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq88 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq88 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq88 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq88 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq88 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq88 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq89 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq89 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq89 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq89 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq89 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq89 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq9 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq9 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq9 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq9 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq9 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq9 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq90 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq90 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq90 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq90 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq90 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq90 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq91 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq91 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq91 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq91 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq91 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq91 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq92 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq92 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq92 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq92 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq92 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq92 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq93 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq93 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq93 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq93 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq93 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq93 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq94 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq94 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq94 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq94 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq94 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq94 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq95 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq95 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq95 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq95 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq95 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq95 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq96 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq96 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq96 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq96 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq96 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq96 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq97 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq97 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq97 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq97 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq97 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq97 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq98 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq98 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq98 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq98 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq98 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq98 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq99 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq99 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq99 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq99 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq99 Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq99 ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar PE Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end1.fastq.gz Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.end2.fastq.gz Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.paired.fastq.gz Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read1.unpaired.fastq.gz Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.paired.fastq.gz Cricetulus_griseus-DNAZoo_Sample2409-SRR10331596.read2.unpaired.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &