export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-12-17-reprocessing-for-Eldon-Emberley/juicer-Peromyscus_crinitus-DNAZoo-subset -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-12-17-reprocessing-for-Eldon-Emberley/juicer-Peromyscus_crinitus-DNAZoo-subset -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Peromyscus_crinitus-pecr10X_v2_HiC/pecr10X_v2_HiC-subset.chrom.sizes -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Peromyscus_crinitus-pecr10X_v2_HiC/bwa-indexes/pecr10X_v2_HiC.fa