Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-12-17-reprocessing-for-Eldon-Emberley/juicer-Peromyscus_crinitus-DNAZoo-subset -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-12-17-reprocessing-for-Eldon-Emberley/juicer-Peromyscus_crinitus-DNAZoo-subset -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Peromyscus_crinitus-pecr10X_v2_HiC/pecr10X_v2_HiC-subset.chrom.sizes -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Peromyscus_crinitus-pecr10X_v2_HiC/bwa-indexes/pecr10X_v2_HiC.fa                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  248,585,690
 Normal Paired: 95,557,085 (38.44%)
 Chimeric Paired: 97,451,055 (39.20%)
 Chimeric Ambiguous: 53,339,059 (21.46%)
 Unmapped: 2,238,491 (0.90%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 193,008,140 (77.64%)
Unique Reads: 164,727,374 (66.27%)
PCR Duplicates: 28,280,766 (11.38%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 592,569,237
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 19,075,119 (7.67% / 11.58%)
Hi-C Contacts: 145,652,255 (58.59% / 88.42%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 25,979,108  (10.45% / 15.77%)
Intra-chromosomal: 119,673,147  (48.14% / 72.65%)
Short Range (<20Kb): 62,631,939  (25.20% / 38.02%)
Long Range (>20Kb): 57,028,792  (22.94% / 34.62%)