Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_40"; scripts/juicer.sh -t 20 -D /srv/scratch/marinovg/juicer-Cricetulus_griseus-DNAZoo -d /srv/scratch/marinovg/juicer-Cricetulus_griseus-DNAZoo -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Cricetulus_griseus-CriGri-PICR_HiC/Cricetulus_griseus-CriGri-PICR_HiC.chrom.sizes -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Cricetulus_griseus-CriGri-PICR_HiC/bwa-indexes/Cricetulus_griseus-CriGri-PICR_HiC.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  425,294,963
 Normal Paired: 177,614,130 (41.76%)
 Chimeric Paired: 159,805,180 (37.58%)
 Chimeric Ambiguous: 85,024,722 (19.99%)
 Unmapped: 2,850,931 (0.67%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 337,419,310 (79.34%)
Unique Reads: 256,751,174 (60.37%)
PCR Duplicates: 80,668,136 (18.97%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 588,043,104
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 54,611,595 (12.84% / 21.27%)
Hi-C Contacts: 202,139,579 (47.53% / 78.73%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 18,875,446  (4.44% / 7.35%)
Intra-chromosomal: 183,264,133  (43.09% / 71.38%)
Short Range (<20Kb): 81,311,232  (19.12% / 31.67%)
Long Range (>20Kb): 101,914,706  (23.96% / 39.69%)