Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_40"; scripts/juicer.sh -t 20 -D /srv/scratch/marinovg/juicer-Cricetulus_griseus-DNAZoo -d /srv/scratch/marinovg/juicer-Cricetulus_griseus-DNAZoo -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Cricetulus_griseus-CriGri-PICR_HiC/Cricetulus_griseus-CriGri-PICR_HiC.chrom.sizes -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Cricetulus_griseus-CriGri-PICR_HiC/bwa-indexes/Cricetulus_griseus-CriGri-PICR_HiC.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  425,294,963
 Normal Paired: 177,614,130 (41.76%)
 Chimeric Paired: 159,805,180 (37.58%)
 Chimeric Ambiguous: 85,024,722 (19.99%)
 Unmapped: 2,850,931 (0.67%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 337,419,310 (79.34%)
Unique Reads: 256,751,174 (60.37%)
PCR Duplicates: 80,668,136 (18.97%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 588,043,104
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 34,238,419 (8.05% / 13.34%)
Hi-C Contacts: 222,512,755 (52.32% / 86.66%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 28,275,759  (6.65% / 11.01%)
Intra-chromosomal: 194,236,996  (45.67% / 75.65%)
Short Range (<20Kb): 86,104,455  (20.25% / 33.54%)
Long Range (>20Kb): 108,090,665  (25.42% / 42.10%)