#!/bin/bash
#SBATCH --job-name=zJuFh-1
#SBATCH --output=zJuFh.1.out
#SBATCH --error=zJuFh.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf,wjg
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
#SBATCH -C NO_GPU
export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.2.13.07/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2026-04-17-NextSeq-run-1/juicer-hg38-L5949-K562_Hi-C_capsules_BioSkryb-L3468-lung_firboblasts_HCMV -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2026-04-17-NextSeq-run-1/juicer-hg38-L5949-K562_Hi-C_capsules_BioSkryb-L3468-lung_firboblasts_HCMV -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa