will treat all alignments as unique
testing for NH tags presence
chrStats: GG662845	2216158	78619	0
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['GG663349', '1102', '0', '0']
chrStats: GG662894	1102	4	0
['GG662894', '1102', '4', '0']
chrStats: GG663185	1099	2	0
['GG663185', '1099', '2', '0']
chrStats: GG663163	1099	4	0
['GG663163', '1099', '4', '0']
chrStats: GG663270	1099	0	0
['GG663270', '1099', '0', '0']
chrStats: GG663267	1097	0	0
['GG663267', '1097', '0', '0']
chrStats: GG662982	1097	14	0
['GG662982', '1097', '14', '0']
chrStats: GG662976	1097	0	0
['GG662976', '1097', '0', '0']
chrStats: GG662981	1096	2	0
['GG662981', '1096', '2', '0']
chrStats: GG662990	1095	10	0
['GG662990', '1095', '10', '0']
chrStats: GG663212	1095	4	0
['GG663212', '1095', '4', '0']
chrStats: GG662985	1094	10	0
['GG662985', '1094', '10', '0']
chrStats: GG663064	1094	26	0
['GG663064', '1094', '26', '0']
chrStats: GG662991	1094	4	0
['GG662991', '1094', '4', '0']
chrStats: GG662954	1094	2	0
['GG662954', '1094', '2', '0']
chrStats: GG663194	1094	1	0
['GG663194', '1094', '1', '0']
chrStats: GG663077	1093	12	0
['GG663077', '1093', '12', '0']
chrStats: GG663023	1091	11	0
['GG663023', '1091', '11', '0']
chrStats: GG662992	1090	0	0
['GG662992', '1090', '0', '0']
chrStats: GG663117	1089	6	0
['GG663117', '1089', '6', '0']
chrStats: GG663327	1089	0	0
['GG663327', '1089', '0', '0']
chrStats: GG663217	1089	2	0
['GG663217', '1089', '2', '0']
chrStats: GG663079	1088	4	0
['GG663079', '1088', '4', '0']
chrStats: GG662935	1088	12	0
['GG662935', '1088', '12', '0']
chrStats: GG662961	1087	16	0
['GG662961', '1087', '16', '0']
chrStats: GG662952	1087	6	0
['GG662952', '1087', '6', '0']
chrStats: GG662897	1087	0	0
['GG662897', '1087', '0', '0']
chrStats: GG662929	1085	9	0
['GG662929', '1085', '9', '0']
chrStats: GG663082	1085	21	0
['GG663082', '1085', '21', '0']
chrStats: GG663009	1085	10	0
['GG663009', '1085', '10', '0']
chrStats: GG663141	1084	38	0
['GG663141', '1084', '38', '0']
chrStats: GG663258	1084	6	0
['GG663258', '1084', '6', '0']
chrStats: GG663012	1084	17	0
['GG663012', '1084', '17', '0']
chrStats: GG663318	1084	0	0
['GG663318', '1084', '0', '0']
chrStats: GG663269	1084	0	0
['GG663269', '1084', '0', '0']
chrStats: GG663357	1084	0	0
['GG663357', '1084', '0', '0']
chrStats: GG662966	1083	2	0
['GG662966', '1083', '2', '0']
chrStats: GG663207	1083	0	0
['GG663207', '1083', '0', '0']
chrStats: GG663341	1082	0	0
['GG663341', '1082', '0', '0']
chrStats: GG663114	1081	0	0
['GG663114', '1081', '0', '0']
chrStats: GG662989	1081	0	0
['GG662989', '1081', '0', '0']
chrStats: GG663033	1080	10	0
['GG663033', '1080', '10', '0']
chrStats: GG662906	1080	0	0
['GG662906', '1080', '0', '0']
chrStats: GG663347	1079	0	0
['GG663347', '1079', '0', '0']
chrStats: GG662987	1078	22	0
['GG662987', '1078', '22', '0']
chrStats: GG663173	1078	43	0
['GG663173', '1078', '43', '0']
chrStats: GG663306	1077	0	0
['GG663306', '1077', '0', '0']
chrStats: GG663360	1076	2	0
['GG663360', '1076', '2', '0']
chrStats: GG662884	1074	10	0
['GG662884', '1074', '10', '0']
chrStats: GG663124	1073	5	0
['GG663124', '1073', '5', '0']
chrStats: GG662944	1073	26	0
['GG662944', '1073', '26', '0']
chrStats: GG663134	1072	0	0
['GG663134', '1072', '0', '0']
chrStats: GG663084	1072	2	0
['GG663084', '1072', '2', '0']
chrStats: GG662962	1071	0	0
['GG662962', '1071', '0', '0']
chrStats: GG662876	1071	0	0
['GG662876', '1071', '0', '0']
chrStats: GG663354	1068	0	0
['GG663354', '1068', '0', '0']
chrStats: GG663181	1066	20	0
['GG663181', '1066', '20', '0']
chrStats: GG663046	1066	2	0
['GG663046', '1066', '2', '0']
chrStats: GG663119	1066	0	0
['GG663119', '1066', '0', '0']
chrStats: GG662936	1066	8	0
['GG662936', '1066', '8', '0']
chrStats: GG663097	1066	0	0
['GG663097', '1066', '0', '0']
chrStats: GG663130	1065	25	0
['GG663130', '1065', '25', '0']
chrStats: GG663311	1065	0	0
['GG663311', '1065', '0', '0']
chrStats: GG662402	1064	4	0
['GG662402', '1064', '4', '0']
chrStats: GG663000	1064	33	0
['GG663000', '1064', '33', '0']
chrStats: GG663290	1064	16	0
['GG663290', '1064', '16', '0']
chrStats: GG663049	1064	14	0
['GG663049', '1064', '14', '0']
chrStats: GG663176	1063	2	0
['GG663176', '1063', '2', '0']
chrStats: GG663260	1063	22	0
['GG663260', '1063', '22', '0']
chrStats: GG662978	1062	0	0
['GG662978', '1062', '0', '0']
chrStats: GG663164	1061	12	0
['GG663164', '1061', '12', '0']
chrStats: GG662928	1061	0	0
['GG662928', '1061', '0', '0']
chrStats: GG663319	1060	0	0
['GG663319', '1060', '0', '0']
chrStats: GG662920	1060	0	0
['GG662920', '1060', '0', '0']
chrStats: GG662878	1059	0	0
['GG662878', '1059', '0', '0']
chrStats: GG663335	1059	14	0
['GG663335', '1059', '14', '0']
chrStats: GG663031	1059	0	0
['GG663031', '1059', '0', '0']
chrStats: GG663108	1058	6	0
['GG663108', '1058', '6', '0']
chrStats: GG663106	1058	10	0
['GG663106', '1058', '10', '0']
chrStats: GG662872	1057	6	0
['GG662872', '1057', '6', '0']
chrStats: GG663034	1057	26	0
['GG663034', '1057', '26', '0']
chrStats: GG663273	1057	6	0
['GG663273', '1057', '6', '0']
chrStats: GG663021	1055	4	0
['GG663021', '1055', '4', '0']
chrStats: GG663126	1055	4	0
['GG663126', '1055', '4', '0']
chrStats: GG662887	1055	0	0
['GG662887', '1055', '0', '0']
chrStats: GG662948	1054	62	0
['GG662948', '1054', '62', '0']
chrStats: GG662883	1054	0	0
['GG662883', '1054', '0', '0']
chrStats: GG662921	1054	0	0
['GG662921', '1054', '0', '0']
chrStats: GG663107	1053	0	0
['GG663107', '1053', '0', '0']
chrStats: GG662933	1051	0	0
['GG662933', '1051', '0', '0']
chrStats: GG663235	1051	0	0
['GG663235', '1051', '0', '0']
chrStats: GG663278	1050	2	0
['GG663278', '1050', '2', '0']
chrStats: GG663182	1050	8	0
['GG663182', '1050', '8', '0']
chrStats: GG663058	1050	0	0
['GG663058', '1050', '0', '0']
chrStats: GG663241	1050	24	0
['GG663241', '1050', '24', '0']
chrStats: GG663131	1048	0	0
['GG663131', '1048', '0', '0']
chrStats: GG663300	1048	6	0
['GG663300', '1048', '6', '0']
chrStats: GG663076	1047	0	0
['GG663076', '1047', '0', '0']
chrStats: GG663186	1046	2	0
['GG663186', '1046', '2', '0']
chrStats: GG663035	1046	24	0
['GG663035', '1046', '24', '0']
chrStats: GG663236	1045	0	0
['GG663236', '1045', '0', '0']
chrStats: GG663170	1045	0	0
['GG663170', '1045', '0', '0']
chrStats: GG663189	1045	0	0
['GG663189', '1045', '0', '0']
chrStats: GG663050	1044	0	0
['GG663050', '1044', '0', '0']
chrStats: GG663098	1044	14	0
['GG663098', '1044', '14', '0']
chrStats: GG663299	1042	0	0
['GG663299', '1042', '0', '0']
chrStats: GG662905	1041	0	0
['GG662905', '1041', '0', '0']
chrStats: GG663200	1041	20	0
['GG663200', '1041', '20', '0']
chrStats: GG662904	1041	12	0
['GG662904', '1041', '12', '0']
chrStats: GG663250	1041	0	0
['GG663250', '1041', '0', '0']
chrStats: GG663055	1040	10	0
['GG663055', '1040', '10', '0']
chrStats: GG663328	1040	2	0
['GG663328', '1040', '2', '0']
chrStats: GG663271	1039	0	0
['GG663271', '1039', '0', '0']
chrStats: GG663297	1039	6	0
['GG663297', '1039', '6', '0']
chrStats: GG663029	1039	44	0
['GG663029', '1039', '44', '0']
chrStats: GG663146	1038	77	0
['GG663146', '1038', '77', '0']
chrStats: GG663214	1038	0	0
['GG663214', '1038', '0', '0']
chrStats: GG663239	1038	0	0
['GG663239', '1038', '0', '0']
chrStats: GG662885	1038	12	0
['GG662885', '1038', '12', '0']
chrStats: GG663274	1037	6	0
['GG663274', '1037', '6', '0']
chrStats: GG663294	1037	2	0
['GG663294', '1037', '2', '0']
chrStats: GG663147	1037	18	0
['GG663147', '1037', '18', '0']
chrStats: GG663312	1036	10	0
['GG663312', '1036', '10', '0']
chrStats: GG663188	1036	6	0
['GG663188', '1036', '6', '0']
chrStats: GG663025	1036	0	0
['GG663025', '1036', '0', '0']
chrStats: GG663063	1036	0	0
['GG663063', '1036', '0', '0']
chrStats: GG662890	1036	35	0
['GG662890', '1036', '35', '0']
chrStats: GG663115	1036	12	0
['GG663115', '1036', '12', '0']
chrStats: GG663238	1035	6	0
['GG663238', '1035', '6', '0']
chrStats: GG662911	1035	6	0
['GG662911', '1035', '6', '0']
chrStats: GG663275	1035	0	0
['GG663275', '1035', '0', '0']
chrStats: GG663156	1034	27	0
['GG663156', '1034', '27', '0']
chrStats: GG663310	1034	9	0
['GG663310', '1034', '9', '0']
chrStats: GG662908	1034	2	0
['GG662908', '1034', '2', '0']
chrStats: GG663320	1033	0	0
['GG663320', '1033', '0', '0']
chrStats: GG663285	1032	0	0
['GG663285', '1032', '0', '0']
chrStats: GG663334	1031	0	0
['GG663334', '1031', '0', '0']
chrStats: GG663041	1031	0	0
['GG663041', '1031', '0', '0']
chrStats: GG662891	1030	0	0
['GG662891', '1030', '0', '0']
chrStats: GG663195	1030	0	0
['GG663195', '1030', '0', '0']
chrStats: GG663213	1030	0	0
['GG663213', '1030', '0', '0']
chrStats: GG663052	1029	0	0
['GG663052', '1029', '0', '0']
chrStats: GG663272	1028	6	0
['GG663272', '1028', '6', '0']
chrStats: GG662975	1028	4	0
['GG662975', '1028', '4', '0']
chrStats: GG663159	1028	0	0
['GG663159', '1028', '0', '0']
chrStats: GG663302	1027	0	0
['GG663302', '1027', '0', '0']
chrStats: GG663253	1027	6	0
['GG663253', '1027', '6', '0']
chrStats: GG663113	1027	0	0
['GG663113', '1027', '0', '0']
chrStats: GG663204	1027	0	0
['GG663204', '1027', '0', '0']
chrStats: GG663232	1026	2	0
['GG663232', '1026', '2', '0']
chrStats: GG663152	1025	2	0
['GG663152', '1025', '2', '0']
chrStats: GG662939	1025	0	0
['GG662939', '1025', '0', '0']
chrStats: GG662898	1025	2	0
['GG662898', '1025', '2', '0']
chrStats: GG663094	1025	0	0
['GG663094', '1025', '0', '0']
chrStats: GG663193	1024	34	0
['GG663193', '1024', '34', '0']
chrStats: GG663292	1023	0	0
['GG663292', '1023', '0', '0']
chrStats: GG663032	1023	4	0
['GG663032', '1023', '4', '0']
chrStats: GG663286	1023	0	0
['GG663286', '1023', '0', '0']
chrStats: GG662958	1023	0	0
['GG662958', '1023', '0', '0']
chrStats: GG663323	1022	0	0
['GG663323', '1022', '0', '0']
chrStats: GG663102	1022	6	0
['GG663102', '1022', '6', '0']
chrStats: GG663127	1021	4	0
['GG663127', '1021', '4', '0']
chrStats: GG663078	1021	0	0
['GG663078', '1021', '0', '0']
chrStats: GG663304	1021	0	0
['GG663304', '1021', '0', '0']
chrStats: GG663233	1020	12	0
['GG663233', '1020', '12', '0']
chrStats: GG663123	1020	8	0
['GG663123', '1020', '8', '0']
chrStats: GG663074	1020	0	0
['GG663074', '1020', '0', '0']
chrStats: GG662943	1020	0	0
['GG662943', '1020', '0', '0']
chrStats: GG663016	1019	0	0
['GG663016', '1019', '0', '0']
chrStats: GG662889	1019	12	0
['GG662889', '1019', '12', '0']
chrStats: GG663092	1019	10	0
['GG663092', '1019', '10', '0']
chrStats: GG662977	1019	0	0
['GG662977', '1019', '0', '0']
chrStats: GG663284	1019	36	0
['GG663284', '1019', '36', '0']
chrStats: GG663339	1018	0	0
['GG663339', '1018', '0', '0']
chrStats: GG663298	1018	0	0
['GG663298', '1018', '0', '0']
chrStats: GG662919	1016	20	0
['GG662919', '1016', '20', '0']
chrStats: GG663326	1016	4	0
['GG663326', '1016', '4', '0']
chrStats: GG663057	1016	4	0
['GG663057', '1016', '4', '0']
chrStats: GG663333	1016	0	0
['GG663333', '1016', '0', '0']
chrStats: GG663313	1015	32	0
['GG663313', '1015', '32', '0']
chrStats: GG663148	1015	0	0
['GG663148', '1015', '0', '0']
chrStats: GG663096	1015	12	0
['GG663096', '1015', '12', '0']
chrStats: GG663256	1014	0	0
['GG663256', '1014', '0', '0']
chrStats: GG663067	1013	0	0
['GG663067', '1013', '0', '0']
chrStats: GG663020	1013	10	0
['GG663020', '1013', '10', '0']
chrStats: GG663081	1013	51	0
['GG663081', '1013', '51', '0']
chrStats: GG663197	1013	6	0
['GG663197', '1013', '6', '0']
chrStats: GG662922	1012	23	0
['GG662922', '1012', '23', '0']
chrStats: GG663191	1012	0	0
['GG663191', '1012', '0', '0']
chrStats: GG663257	1011	0	0
['GG663257', '1011', '0', '0']
chrStats: GG663282	1011	22	0
['GG663282', '1011', '22', '0']
chrStats: GG663004	1010	4	0
['GG663004', '1010', '4', '0']
chrStats: GG663122	1010	18	0
['GG663122', '1010', '18', '0']
chrStats: GG663280	1010	4	0
['GG663280', '1010', '4', '0']
chrStats: GG663283	1009	14	0
['GG663283', '1009', '14', '0']
chrStats: GG663090	1009	4	0
['GG663090', '1009', '4', '0']
chrStats: GG662963	1008	0	0
['GG662963', '1008', '0', '0']
chrStats: GG663040	1008	20	0
['GG663040', '1008', '20', '0']
chrStats: GG662964	1008	8	0
['GG662964', '1008', '8', '0']
chrStats: GG663220	1008	10	0
['GG663220', '1008', '10', '0']
chrStats: GG663153	1007	12	0
['GG663153', '1007', '12', '0']
chrStats: GG663245	1007	0	0
['GG663245', '1007', '0', '0']
chrStats: GG662875	1007	52	0
['GG662875', '1007', '52', '0']
chrStats: GG662250	1007	1003	0
['GG662250', '1007', '1003', '0']
chrStats: GG663288	1007	0	0
['GG663288', '1007', '0', '0']
chrStats: GG663091	1006	0	0
['GG663091', '1006', '0', '0']
chrStats: GG662886	1006	4	0
['GG662886', '1006', '4', '0']
chrStats: GG663223	1006	2	0
['GG663223', '1006', '2', '0']
chrStats: GG663066	1006	2	0
['GG663066', '1006', '2', '0']
chrStats: GG663175	1006	0	0
['GG663175', '1006', '0', '0']
chrStats: GG663140	1006	0	0
['GG663140', '1006', '0', '0']
chrStats: GG663262	1005	22	0
['GG663262', '1005', '22', '0']
chrStats: GG663225	1005	0	0
['GG663225', '1005', '0', '0']
chrStats: GG663099	1005	0	0
['GG663099', '1005', '0', '0']
chrStats: GG662895	1004	4	0
['GG662895', '1004', '4', '0']
chrStats: GG663177	1004	6	0
['GG663177', '1004', '6', '0']
chrStats: GG663129	1003	2	0
['GG663129', '1003', '2', '0']
chrStats: GG663340	1003	0	0
['GG663340', '1003', '0', '0']
chrStats: GG662888	1002	0	0
['GG662888', '1002', '0', '0']
chrStats: GG662998	1002	8	0
['GG662998', '1002', '8', '0']
chrStats: GG663316	1001	19	0
['GG663316', '1001', '19', '0']
chrStats: GG663155	1000	8	0
['GG663155', '1000', '8', '0']
chrStats: GG663355	251	0	0
['GG663355', '251', '0', '0']
chrStats: chrM	47577	26166	0
['chrM', '47577', '26166', '0']
chrStats: *	0	0	0
['*', '0', '0', '0']
found 3588165 reads
RPM normalization Factor = 3.588165