python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5198-sperm_directly_fixed_SMF_900.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5198-sperm_directly_fixed_SMF_900.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5199-sperm_directly_fixed_SMF_100.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5199-sperm_directly_fixed_SMF_100.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5200-sperm_directly_fixed_SMF_10.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5200-sperm_directly_fixed_SMF_10.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5201-sperm_spin_then_fix_SMF_900.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5201-sperm_spin_then_fix_SMF_900.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5202-sperm_spin_then_fix_SMF_100.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5202-sperm_spin_then_fix_SMF_100.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5203-sperm_spin_then_fix_SMF_10.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5203-sperm_spin_then_fix_SMF_10.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5198-sperm_directly_fixed_SMF_900.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5198-sperm_directly_fixed_SMF_900.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5199-sperm_directly_fixed_SMF_100.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5199-sperm_directly_fixed_SMF_100.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5200-sperm_directly_fixed_SMF_10.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5200-sperm_directly_fixed_SMF_10.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5201-sperm_spin_then_fix_SMF_900.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5201-sperm_spin_then_fix_SMF_900.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5202-sperm_spin_then_fix_SMF_100.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5202-sperm_spin_then_fix_SMF_100.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5203-sperm_spin_then_fix_SMF_10.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5203-sperm_spin_then_fix_SMF_10.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5204-sperm_PureSperm_SMF_900.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5204-sperm_PureSperm_SMF_900.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5205-sperm_PureSperm_SMF_100.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5205-sperm_PureSperm_SMF_100.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L5206-sperm_PureSperm_SMF_10.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L5206-sperm_PureSperm_SMF_10.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 Vinson1.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-Vinson1.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 Vinson2.2x36mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-Vinson2.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5204-sperm_PureSperm_SMF_900.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5204-sperm_PureSperm_SMF_900.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5205-sperm_PureSperm_SMF_100.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5205-sperm_PureSperm_SMF_100.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L5206-sperm_PureSperm_SMF_10.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L5206-sperm_PureSperm_SMF_10.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 Vinson1.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-Vinson1.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 Vinson2.2x36mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-Vinson2.hg38.allC -bismark.cov &