python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4828-K562-native-SMF-150K_10uL_CseDa01_1min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4828-K562-native-SMF-150K_10uL_CseDa01_1min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4829-K562-native-SMF-150K_10uL_CseDa01_3min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4829-K562-native-SMF-150K_10uL_CseDa01_3min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4830-K562-native-SMF-150K_10uL_CseDa01_5min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4830-K562-native-SMF-150K_10uL_CseDa01_5min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4831-K562-native-SMF-150K_10uL_CseDa01_10min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4831-K562-native-SMF-150K_10uL_CseDa01_10min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4828-K562-native-SMF-150K_10uL_CseDa01_1min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4828-K562-native-SMF-150K_10uL_CseDa01_1min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4829-K562-native-SMF-150K_10uL_CseDa01_3min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4829-K562-native-SMF-150K_10uL_CseDa01_3min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4830-K562-native-SMF-150K_10uL_CseDa01_5min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4830-K562-native-SMF-150K_10uL_CseDa01_5min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4831-K562-native-SMF-150K_10uL_CseDa01_10min_UGI.2x75mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4831-K562-native-SMF-150K_10uL_CseDa01_10min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4832-K562-native-SMF-150K_10uL_CseDa01_1min.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4832-K562-native-SMF-150K_10uL_CseDa01_1min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4833-K562-native-SMF-150K_10uL_CseDa01_3min.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4833-K562-native-SMF-150K_10uL_CseDa01_3min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4834-K562-native-SMF-150K_10uL_CseDa01_5min.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4834-K562-native-SMF-150K_10uL_CseDa01_5min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4835-K562-native-SMF-150K_10uL_CseDa01_10min.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4835-K562-native-SMF-150K_10uL_CseDa01_10min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4832-K562-native-SMF-150K_10uL_CseDa01_1min.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4832-K562-native-SMF-150K_10uL_CseDa01_1min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4833-K562-native-SMF-150K_10uL_CseDa01_3min.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4833-K562-native-SMF-150K_10uL_CseDa01_3min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4834-K562-native-SMF-150K_10uL_CseDa01_5min.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4834-K562-native-SMF-150K_10uL_CseDa01_5min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4835-K562-native-SMF-150K_10uL_CseDa01_10min.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4835-K562-native-SMF-150K_10uL_CseDa01_10min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4836-K562-native-SMF-600K_10uL_CseDa01_3min_UGI.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4836-K562-native-SMF-600K_10uL_CseDa01_3min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4837-K562-native-SMF-600K_10uL_CseDa01_10min_UGI.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4837-K562-native-SMF-600K_10uL_CseDa01_10min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4838-K562-native-SMF-600K_10uL_CseDa01_3min.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4838-K562-native-SMF-600K_10uL_CseDa01_3min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4839-K562-native-SMF-600K_10uL_CseDa01_10min.2x50mers.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4839-K562-native-SMF-600K_10uL_CseDa01_10min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4836-K562-native-SMF-600K_10uL_CseDa01_3min_UGI.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4836-K562-native-SMF-600K_10uL_CseDa01_3min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4837-K562-native-SMF-600K_10uL_CseDa01_10min_UGI.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4837-K562-native-SMF-600K_10uL_CseDa01_10min_UGI.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4838-K562-native-SMF-600K_10uL_CseDa01_3min.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4838-K562-native-SMF-600K_10uL_CseDa01_3min.hg38.allC -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4839-K562-native-SMF-600K_10uL_CseDa01_10min.2x50mers.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4839-K562-native-SMF-600K_10uL_CseDa01_10min.hg38.allC -bismark.cov &