## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX8.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX8.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX8.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	437948	417586	0	7875	4835	0.017982	30708563

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011084
2.0	2.007851
3.0	2.990503
4.0	3.959241
5.0	4.914261
6.0	5.855758
7.0	6.783923
8.0	7.698945
9.0	8.601011
10.0	9.490302
11.0	10.367002
12.0	11.231287
13.0	12.083333
14.0	12.923314
15.0	13.751401
16.0	14.567763
17.0	15.372564
18.0	16.165969
19.0	16.948139
20.0	17.719234
21.0	18.47941
22.0	19.228821
23.0	19.967621
24.0	20.695959
25.0	21.413984
26.0	22.121841
27.0	22.819675
28.0	23.507627
29.0	24.185838
30.0	24.854445
31.0	25.513585
32.0	26.163391
33.0	26.803996
34.0	27.435529
35.0	28.05812
36.0	28.671895
37.0	29.276979
38.0	29.873494
39.0	30.461563
40.0	31.041305
41.0	31.612837
42.0	32.176276
43.0	32.731737
44.0	33.279333
45.0	33.819174
46.0	34.351371
47.0	34.876032
48.0	35.393264
49.0	35.903172
50.0	36.405859
51.0	36.901428
52.0	37.38998
53.0	37.871614
54.0	38.346427
55.0	38.814518
56.0	39.27598
57.0	39.730907
58.0	40.179393
59.0	40.621528
60.0	41.057402
61.0	41.487104
62.0	41.910722
63.0	42.328341
64.0	42.740047
65.0	43.145922
66.0	43.546051
67.0	43.940513
68.0	44.32939
69.0	44.71276
70.0	45.090701
71.0	45.463291
72.0	45.830605
73.0	46.192718
74.0	46.549703
75.0	46.901633
76.0	47.24858
77.0	47.590613
78.0	47.927804
79.0	48.26022
80.0	48.587929
81.0	48.910997
82.0	49.229491
83.0	49.543474
84.0	49.853012
85.0	50.158166
86.0	50.459
87.0	50.755573
88.0	51.047948
89.0	51.336181
90.0	51.620334
91.0	51.900463
92.0	52.176625
93.0	52.448877
94.0	52.717273
95.0	52.981869
96.0	53.242718
97.0	53.499874
98.0	53.753388
99.0	54.003312
100.0	54.249698