## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX7.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX7.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX7.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	580755	1099058	0	7538	5933	0.01298	102742986

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.010292
2.0	2.01489
3.0	3.013825
4.0	4.00713
5.0	4.994836
6.0	5.976975
7.0	6.953577
8.0	7.924675
9.0	8.8903
10.0	9.850481
11.0	10.805251
12.0	11.754639
13.0	12.698675
14.0	13.637391
15.0	14.570815
16.0	15.498978
17.0	16.42191
18.0	17.339639
19.0	18.252196
20.0	19.159608
21.0	20.061906
22.0	20.959119
23.0	21.851274
24.0	22.7384
25.0	23.620526
26.0	24.49768
27.0	25.36989
28.0	26.237183
29.0	27.099588
30.0	27.957132
31.0	28.809842
32.0	29.657746
33.0	30.500871
34.0	31.339243
35.0	32.17289
36.0	33.001838
37.0	33.826114
38.0	34.645743
39.0	35.460753
40.0	36.271169
41.0	37.077016
42.0	37.878322
43.0	38.675111
44.0	39.467409
45.0	40.255241
46.0	41.038632
47.0	41.817608
48.0	42.592193
49.0	43.362412
50.0	44.128289
51.0	44.88985
52.0	45.647118
53.0	46.400118
54.0	47.148873
55.0	47.893408
56.0	48.633747
57.0	49.369912
58.0	50.101928
59.0	50.829818
60.0	51.553605
61.0	52.273313
62.0	52.988963
63.0	53.70058
64.0	54.408186
65.0	55.111804
66.0	55.811455
67.0	56.507163
68.0	57.19895
69.0	57.886837
70.0	58.570847
71.0	59.251001
72.0	59.927322
73.0	60.59983
74.0	61.268548
75.0	61.933497
76.0	62.594697
77.0	63.252171
78.0	63.905939
79.0	64.556022
80.0	65.20244
81.0	65.845215
82.0	66.484367
83.0	67.119917
84.0	67.751884
85.0	68.380289
86.0	69.005151
87.0	69.626492
88.0	70.244331
89.0	70.858687
90.0	71.46958
91.0	72.07703
92.0	72.681056
93.0	73.281678
94.0	73.878913
95.0	74.472783
96.0	75.063305
97.0	75.650499
98.0	76.234383
99.0	76.814976
100.0	77.392296