## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX6.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX6.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX6.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	715801	502590	0	6226	3999	0.008698	113517006

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.0056
2.0	2.00488
3.0	2.997878
4.0	3.984634
5.0	4.965188
6.0	5.939578
7.0	6.907843
8.0	7.870022
9.0	8.826153
10.0	9.776274
11.0	10.720422
12.0	11.658636
13.0	12.590952
14.0	13.517408
15.0	14.43804
16.0	15.352885
17.0	16.26198
18.0	17.165361
19.0	18.063062
20.0	18.955121
21.0	19.841573
22.0	20.722453
23.0	21.597795
24.0	22.467636
25.0	23.332008
26.0	24.190948
27.0	25.044488
28.0	25.892663
29.0	26.735506
30.0	27.573052
31.0	28.405333
32.0	29.232382
33.0	30.054232
34.0	30.870917
35.0	31.682468
36.0	32.488918
37.0	33.290298
38.0	34.086641
39.0	34.877979
40.0	35.664342
41.0	36.445763
42.0	37.222271
43.0	37.993899
44.0	38.760676
45.0	39.522633
46.0	40.279801
47.0	41.032209
48.0	41.779888
49.0	42.522867
50.0	43.261176
51.0	43.994844
52.0	44.7239
53.0	45.448373
54.0	46.168293
55.0	46.883687
56.0	47.594585
57.0	48.301013
58.0	49.003002
59.0	49.700578
60.0	50.393768
61.0	51.082602
62.0	51.767106
63.0	52.447307
64.0	53.123232
65.0	53.794909
66.0	54.462364
67.0	55.125623
68.0	55.784713
69.0	56.43966
70.0	57.09049
71.0	57.737229
72.0	58.379903
73.0	59.018537
74.0	59.653157
75.0	60.283788
76.0	60.910454
77.0	61.533182
78.0	62.151995
79.0	62.766918
80.0	63.377976
81.0	63.985193
82.0	64.588594
83.0	65.188201
84.0	65.784039
85.0	66.376132
86.0	66.964503
87.0	67.549176
88.0	68.130174
89.0	68.707519
90.0	69.281236
91.0	69.851346
92.0	70.417872
93.0	70.980838
94.0	71.540265
95.0	72.096175
96.0	72.648591
97.0	73.197534
98.0	73.743027
99.0	74.285092
100.0	74.823748