## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX5.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX5.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX5.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	1845104	921376	0	22131	13460	0.011994	192845302

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.007313
2.0	2.005035
3.0	2.993256
4.0	3.972068
5.0	4.941558
6.0	5.901818
7.0	6.852933
8.0	7.794992
9.0	8.72808
10.0	9.652283
11.0	10.567686
12.0	11.474372
13.0	12.372425
14.0	13.261926
15.0	14.142957
16.0	15.015599
17.0	15.879932
18.0	16.736034
19.0	17.583984
20.0	18.42386
21.0	19.255738
22.0	20.079695
23.0	20.895806
24.0	21.704147
25.0	22.50479
26.0	23.297809
27.0	24.083277
28.0	24.861265
29.0	25.631845
30.0	26.395088
31.0	27.151063
32.0	27.89984
33.0	28.641486
34.0	29.376071
35.0	30.10366
36.0	30.824322
37.0	31.538121
38.0	32.245123
39.0	32.945393
40.0	33.638995
41.0	34.325992
42.0	35.006448
43.0	35.680424
44.0	36.347983
45.0	37.009185
46.0	37.66409
47.0	38.31276
48.0	38.955253
49.0	39.591628
50.0	40.221944
51.0	40.846257
52.0	41.464626
53.0	42.077106
54.0	42.683754
55.0	43.284626
56.0	43.879776
57.0	44.469259
58.0	45.053128
59.0	45.631438
60.0	46.204242
61.0	46.771591
62.0	47.333537
63.0	47.890133
64.0	48.441429
65.0	48.987475
66.0	49.528321
67.0	50.064018
68.0	50.594613
69.0	51.120156
70.0	51.640695
71.0	52.156277
72.0	52.66695
73.0	53.17276
74.0	53.673753
75.0	54.169976
76.0	54.661474
77.0	55.148292
78.0	55.630474
79.0	56.108065
80.0	56.581108
81.0	57.049647
82.0	57.513724
83.0	57.973382
84.0	58.428663
85.0	58.879609
86.0	59.326261
87.0	59.76866
88.0	60.206847
89.0	60.64086
90.0	61.070741
91.0	61.496529
92.0	61.918262
93.0	62.33598
94.0	62.74972
95.0	63.15952
96.0	63.565418
97.0	63.967451
98.0	64.365655
99.0	64.760068
100.0	65.150725