## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX3.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX3.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX3.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	5804317	5640154	0	154317	70830	0.026587	194958366

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012171
2.0	1.994651
3.0	2.948312
4.0	3.874
5.0	4.772533
6.0	5.64471
7.0	6.491303
8.0	7.313063
9.0	8.110718
10.0	8.884974
11.0	9.63652
12.0	10.36602
13.0	11.074122
14.0	11.761452
15.0	12.428621
16.0	13.07622
17.0	13.704823
18.0	14.314986
19.0	14.907252
20.0	15.482144
21.0	16.040173
22.0	16.581833
23.0	17.107605
24.0	17.617954
25.0	18.113333
26.0	18.59418
27.0	19.060923
28.0	19.513975
29.0	19.953737
30.0	20.380599
31.0	20.794941
32.0	21.197128
33.0	21.587518
34.0	21.966456
35.0	22.334279
36.0	22.691313
37.0	23.037873
38.0	23.374268
39.0	23.700795
40.0	24.017745
41.0	24.325397
42.0	24.624024
43.0	24.913892
44.0	25.195257
45.0	25.468369
46.0	25.733469
47.0	25.990793
48.0	26.240569
49.0	26.483019
50.0	26.718356
51.0	26.94679
52.0	27.168524
53.0	27.383753
54.0	27.592669
55.0	27.795457
56.0	27.992296
57.0	28.183362
58.0	28.368822
59.0	28.548843
60.0	28.723583
61.0	28.893197
62.0	29.057837
63.0	29.217646
64.0	29.372768
65.0	29.52334
66.0	29.669495
67.0	29.811362
68.0	29.949069
69.0	30.082735
70.0	30.212481
71.0	30.338422
72.0	30.460668
73.0	30.579328
74.0	30.694507
75.0	30.806308
76.0	30.914829
77.0	31.020167
78.0	31.122415
79.0	31.221664
80.0	31.318001
81.0	31.411513
82.0	31.502282
83.0	31.590388
84.0	31.675909
85.0	31.758922
86.0	31.8395
87.0	31.917715
88.0	31.993635
89.0	32.067328
90.0	32.138859
91.0	32.208292
92.0	32.275689
93.0	32.341108
94.0	32.404609
95.0	32.466247
96.0	32.526077
97.0	32.584152
98.0	32.640523
99.0	32.695241
100.0	32.748353