## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX2.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX2.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX2.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	11156247	8306616	0	313474	143109	0.028099	352288091

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.01279
2.0	1.994009
3.0	2.944642
4.0	3.865642
5.0	4.757933
6.0	5.622409
7.0	6.459938
8.0	7.27136
9.0	8.057489
10.0	8.819112
11.0	9.556994
12.0	10.271876
13.0	10.964473
14.0	11.63548
15.0	12.285571
16.0	12.915398
17.0	13.525591
18.0	14.116764
19.0	14.689509
20.0	15.244401
21.0	15.781995
22.0	16.302832
23.0	16.807433
24.0	17.296305
25.0	17.769938
26.0	18.228807
27.0	18.673373
28.0	19.10408
29.0	19.521361
30.0	19.925635
31.0	20.317307
32.0	20.69677
33.0	21.064405
34.0	21.420579
35.0	21.765651
36.0	22.099967
37.0	22.423861
38.0	22.737659
39.0	23.041675
40.0	23.336215
41.0	23.621573
42.0	23.898036
43.0	24.165882
44.0	24.425378
45.0	24.676785
46.0	24.920355
47.0	25.156333
48.0	25.384955
49.0	25.60645
50.0	25.821041
51.0	26.028943
52.0	26.230364
53.0	26.425506
54.0	26.614566
55.0	26.797732
56.0	26.975188
57.0	27.147113
58.0	27.313679
59.0	27.475053
60.0	27.631396
61.0	27.782866
62.0	27.929614
63.0	28.071788
64.0	28.20953
65.0	28.342978
66.0	28.472266
67.0	28.597525
68.0	28.718878
69.0	28.836449
70.0	28.950355
71.0	29.060711
72.0	29.167626
73.0	29.271209
74.0	29.371563
75.0	29.468789
76.0	29.562984
77.0	29.654242
78.0	29.742656
79.0	29.828314
80.0	29.911302
81.0	29.991703
82.0	30.069598
83.0	30.145065
84.0	30.218179
85.0	30.289014
86.0	30.357641
87.0	30.424129
88.0	30.488544
89.0	30.550951
90.0	30.611413
91.0	30.669991
92.0	30.726742
93.0	30.781724
94.0	30.834993
95.0	30.886601
96.0	30.9366
97.0	30.985041
98.0	31.031971
99.0	31.077439
100.0	31.121489