## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX1.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX1.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX1.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17276699	10665940	0	505972	218123	0.029286	499762367

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012567
2.0	1.990728
3.0	2.935652
4.0	3.848468
5.0	4.730267
6.0	5.582104
7.0	6.404996
8.0	7.199927
9.0	7.967847
10.0	8.709673
11.0	9.426293
12.0	10.118563
13.0	10.78731
14.0	11.433334
15.0	12.057406
16.0	12.660273
17.0	13.242655
18.0	13.805248
19.0	14.348725
20.0	14.873735
21.0	15.380906
22.0	15.870843
23.0	16.344133
24.0	16.801341
25.0	17.243013
26.0	17.669677
27.0	18.081844
28.0	18.480006
29.0	18.864639
30.0	19.236202
31.0	19.59514
32.0	19.941881
33.0	20.276841
34.0	20.600419
35.0	20.913002
36.0	21.214963
37.0	21.506664
38.0	21.788454
39.0	22.060668
40.0	22.323633
41.0	22.577663
42.0	22.823061
43.0	23.06012
44.0	23.289125
45.0	23.510348
46.0	23.724054
47.0	23.930499
48.0	24.129928
49.0	24.322582
50.0	24.508689
51.0	24.688472
52.0	24.862147
53.0	25.02992
54.0	25.191992
55.0	25.348557
56.0	25.499803
57.0	25.645909
58.0	25.787051
59.0	25.923396
60.0	26.055109
61.0	26.182346
62.0	26.30526
63.0	26.423998
64.0	26.538701
65.0	26.649506
66.0	26.756546
67.0	26.859949
68.0	26.959839
69.0	27.056334
70.0	27.149551
71.0	27.2396
72.0	27.32659
73.0	27.410623
74.0	27.491801
75.0	27.570221
76.0	27.645976
77.0	27.719157
78.0	27.789852
79.0	27.858144
80.0	27.924116
81.0	27.987846
82.0	28.049411
83.0	28.108884
84.0	28.166336
85.0	28.221835
86.0	28.275449
87.0	28.327241
88.0	28.377274
89.0	28.425606
90.0	28.472296
91.0	28.517399
92.0	28.56097
93.0	28.603061
94.0	28.643721
95.0	28.682999
96.0	28.720943
97.0	28.757598
98.0	28.793007
99.0	28.827213
100.0	28.860257