python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split0 0 1 2 100 5200.bed.split0.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split1 0 1 2 100 5200.bed.split1.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split10 0 1 2 100 5200.bed.split10.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split100 0 1 2 100 5200.bed.split100.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split101 0 1 2 100 5200.bed.split101.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split102 0 1 2 100 5200.bed.split102.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split103 0 1 2 100 5200.bed.split103.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split104 0 1 2 100 5200.bed.split104.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split105 0 1 2 100 5200.bed.split105.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split106 0 1 2 100 5200.bed.split106.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split107 0 1 2 100 5200.bed.split107.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split108 0 1 2 100 5200.bed.split108.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split109 0 1 2 100 5200.bed.split109.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split11 0 1 2 100 5200.bed.split11.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split110 0 1 2 100 5200.bed.split110.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split111 0 1 2 100 5200.bed.split111.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split112 0 1 2 100 5200.bed.split112.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split113 0 1 2 100 5200.bed.split113.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split114 0 1 2 100 5200.bed.split114.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split115 0 1 2 100 5200.bed.split115.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split116 0 1 2 100 5200.bed.split116.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split117 0 1 2 100 5200.bed.split117.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split118 0 1 2 100 5200.bed.split118.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split119 0 1 2 100 5200.bed.split119.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split12 0 1 2 100 5200.bed.split12.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split120 0 1 2 100 5200.bed.split120.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split121 0 1 2 100 5200.bed.split121.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split122 0 1 2 100 5200.bed.split122.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split123 0 1 2 100 5200.bed.split123.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split124 0 1 2 100 5200.bed.split124.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split125 0 1 2 100 5200.bed.split125.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split126 0 1 2 100 5200.bed.split126.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split127 0 1 2 100 5200.bed.split127.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split128 0 1 2 100 5200.bed.split128.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split129 0 1 2 100 5200.bed.split129.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split13 0 1 2 100 5200.bed.split13.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split130 0 1 2 100 5200.bed.split130.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split131 0 1 2 100 5200.bed.split131.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split132 0 1 2 100 5200.bed.split132.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split133 0 1 2 100 5200.bed.split133.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split134 0 1 2 100 5200.bed.split134.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split135 0 1 2 100 5200.bed.split135.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split136 0 1 2 100 5200.bed.split136.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split137 0 1 2 100 5200.bed.split137.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split138 0 1 2 100 5200.bed.split138.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split139 0 1 2 100 5200.bed.split139.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split14 0 1 2 100 5200.bed.split14.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split140 0 1 2 100 5200.bed.split140.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split141 0 1 2 100 5200.bed.split141.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split142 0 1 2 100 5200.bed.split142.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split143 0 1 2 100 5200.bed.split143.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split144 0 1 2 100 5200.bed.split144.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split145 0 1 2 100 5200.bed.split145.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split146 0 1 2 100 5200.bed.split146.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split147 0 1 2 100 5200.bed.split147.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split148 0 1 2 100 5200.bed.split148.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split149 0 1 2 100 5200.bed.split149.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split15 0 1 2 100 5200.bed.split15.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split150 0 1 2 100 5200.bed.split150.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split151 0 1 2 100 5200.bed.split151.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split152 0 1 2 100 5200.bed.split152.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split153 0 1 2 100 5200.bed.split153.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split154 0 1 2 100 5200.bed.split154.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split155 0 1 2 100 5200.bed.split155.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split156 0 1 2 100 5200.bed.split156.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split157 0 1 2 100 5200.bed.split157.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split158 0 1 2 100 5200.bed.split158.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split159 0 1 2 100 5200.bed.split159.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split16 0 1 2 100 5200.bed.split16.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split160 0 1 2 100 5200.bed.split160.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split161 0 1 2 100 5200.bed.split161.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split162 0 1 2 100 5200.bed.split162.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split163 0 1 2 100 5200.bed.split163.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split164 0 1 2 100 5200.bed.split164.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split165 0 1 2 100 5200.bed.split165.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split166 0 1 2 100 5200.bed.split166.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split167 0 1 2 100 5200.bed.split167.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split168 0 1 2 100 5200.bed.split168.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split169 0 1 2 100 5200.bed.split169.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split17 0 1 2 100 5200.bed.split17.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split170 0 1 2 100 5200.bed.split170.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split171 0 1 2 100 5200.bed.split171.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split172 0 1 2 100 5200.bed.split172.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split173 0 1 2 100 5200.bed.split173.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split174 0 1 2 100 5200.bed.split174.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split175 0 1 2 100 5200.bed.split175.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split176 0 1 2 100 5200.bed.split176.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split177 0 1 2 100 5200.bed.split177.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split178 0 1 2 100 5200.bed.split178.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split179 0 1 2 100 5200.bed.split179.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split18 0 1 2 100 5200.bed.split18.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split180 0 1 2 100 5200.bed.split180.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split181 0 1 2 100 5200.bed.split181.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split182 0 1 2 100 5200.bed.split182.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split183 0 1 2 100 5200.bed.split183.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split184 0 1 2 100 5200.bed.split184.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split185 0 1 2 100 5200.bed.split185.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split186 0 1 2 100 5200.bed.split186.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split187 0 1 2 100 5200.bed.split187.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split188 0 1 2 100 5200.bed.split188.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split189 0 1 2 100 5200.bed.split189.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split19 0 1 2 100 5200.bed.split19.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split190 0 1 2 100 5200.bed.split190.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split191 0 1 2 100 5200.bed.split191.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split192 0 1 2 100 5200.bed.split192.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split193 0 1 2 100 5200.bed.split193.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split194 0 1 2 100 5200.bed.split194.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split195 0 1 2 100 5200.bed.split195.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split196 0 1 2 100 5200.bed.split196.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split197 0 1 2 100 5200.bed.split197.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split198 0 1 2 100 5200.bed.split198.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split199 0 1 2 100 5200.bed.split199.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split2 0 1 2 100 5200.bed.split2.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split20 0 1 2 100 5200.bed.split20.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split200 0 1 2 100 5200.bed.split200.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split201 0 1 2 100 5200.bed.split201.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split202 0 1 2 100 5200.bed.split202.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split203 0 1 2 100 5200.bed.split203.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split204 0 1 2 100 5200.bed.split204.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split205 0 1 2 100 5200.bed.split205.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split206 0 1 2 100 5200.bed.split206.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split207 0 1 2 100 5200.bed.split207.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split208 0 1 2 100 5200.bed.split208.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split209 0 1 2 100 5200.bed.split209.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split21 0 1 2 100 5200.bed.split21.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split210 0 1 2 100 5200.bed.split210.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split211 0 1 2 100 5200.bed.split211.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split212 0 1 2 100 5200.bed.split212.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split213 0 1 2 100 5200.bed.split213.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split214 0 1 2 100 5200.bed.split214.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split215 0 1 2 100 5200.bed.split215.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split216 0 1 2 100 5200.bed.split216.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split217 0 1 2 100 5200.bed.split217.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split218 0 1 2 100 5200.bed.split218.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split219 0 1 2 100 5200.bed.split219.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split22 0 1 2 100 5200.bed.split22.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split220 0 1 2 100 5200.bed.split220.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split221 0 1 2 100 5200.bed.split221.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split222 0 1 2 100 5200.bed.split222.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split223 0 1 2 100 5200.bed.split223.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split224 0 1 2 100 5200.bed.split224.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split225 0 1 2 100 5200.bed.split225.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split226 0 1 2 100 5200.bed.split226.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split227 0 1 2 100 5200.bed.split227.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split228 0 1 2 100 5200.bed.split228.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split229 0 1 2 100 5200.bed.split229.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split23 0 1 2 100 5200.bed.split23.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split230 0 1 2 100 5200.bed.split230.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split231 0 1 2 100 5200.bed.split231.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split232 0 1 2 100 5200.bed.split232.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split233 0 1 2 100 5200.bed.split233.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split234 0 1 2 100 5200.bed.split234.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split235 0 1 2 100 5200.bed.split235.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split236 0 1 2 100 5200.bed.split236.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split237 0 1 2 100 5200.bed.split237.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split238 0 1 2 100 5200.bed.split238.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split239 0 1 2 100 5200.bed.split239.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split24 0 1 2 100 5200.bed.split24.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split240 0 1 2 100 5200.bed.split240.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split241 0 1 2 100 5200.bed.split241.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split242 0 1 2 100 5200.bed.split242.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split243 0 1 2 100 5200.bed.split243.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split244 0 1 2 100 5200.bed.split244.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split245 0 1 2 100 5200.bed.split245.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split246 0 1 2 100 5200.bed.split246.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split247 0 1 2 100 5200.bed.split247.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split248 0 1 2 100 5200.bed.split248.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split249 0 1 2 100 5200.bed.split249.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split25 0 1 2 100 5200.bed.split25.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split250 0 1 2 100 5200.bed.split250.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split251 0 1 2 100 5200.bed.split251.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split252 0 1 2 100 5200.bed.split252.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split253 0 1 2 100 5200.bed.split253.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split254 0 1 2 100 5200.bed.split254.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split255 0 1 2 100 5200.bed.split255.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split256 0 1 2 100 5200.bed.split256.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split257 0 1 2 100 5200.bed.split257.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split258 0 1 2 100 5200.bed.split258.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split259 0 1 2 100 5200.bed.split259.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split26 0 1 2 100 5200.bed.split26.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split260 0 1 2 100 5200.bed.split260.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split261 0 1 2 100 5200.bed.split261.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split262 0 1 2 100 5200.bed.split262.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split263 0 1 2 100 5200.bed.split263.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split264 0 1 2 100 5200.bed.split264.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split265 0 1 2 100 5200.bed.split265.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split266 0 1 2 100 5200.bed.split266.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split267 0 1 2 100 5200.bed.split267.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split268 0 1 2 100 5200.bed.split268.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split269 0 1 2 100 5200.bed.split269.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split27 0 1 2 100 5200.bed.split27.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split270 0 1 2 100 5200.bed.split270.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split271 0 1 2 100 5200.bed.split271.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split272 0 1 2 100 5200.bed.split272.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split273 0 1 2 100 5200.bed.split273.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split274 0 1 2 100 5200.bed.split274.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split275 0 1 2 100 5200.bed.split275.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split276 0 1 2 100 5200.bed.split276.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split277 0 1 2 100 5200.bed.split277.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split278 0 1 2 100 5200.bed.split278.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split279 0 1 2 100 5200.bed.split279.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split28 0 1 2 100 5200.bed.split28.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split280 0 1 2 100 5200.bed.split280.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split281 0 1 2 100 5200.bed.split281.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split282 0 1 2 100 5200.bed.split282.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split283 0 1 2 100 5200.bed.split283.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split284 0 1 2 100 5200.bed.split284.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split285 0 1 2 100 5200.bed.split285.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split286 0 1 2 100 5200.bed.split286.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split287 0 1 2 100 5200.bed.split287.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split288 0 1 2 100 5200.bed.split288.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split289 0 1 2 100 5200.bed.split289.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split29 0 1 2 100 5200.bed.split29.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split290 0 1 2 100 5200.bed.split290.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split291 0 1 2 100 5200.bed.split291.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split292 0 1 2 100 5200.bed.split292.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split293 0 1 2 100 5200.bed.split293.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split294 0 1 2 100 5200.bed.split294.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split295 0 1 2 100 5200.bed.split295.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split296 0 1 2 100 5200.bed.split296.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split297 0 1 2 100 5200.bed.split297.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split298 0 1 2 100 5200.bed.split298.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split299 0 1 2 100 5200.bed.split299.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split3 0 1 2 100 5200.bed.split3.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split30 0 1 2 100 5200.bed.split30.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split300 0 1 2 100 5200.bed.split300.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split301 0 1 2 100 5200.bed.split301.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split302 0 1 2 100 5200.bed.split302.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split303 0 1 2 100 5200.bed.split303.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split304 0 1 2 100 5200.bed.split304.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split305 0 1 2 100 5200.bed.split305.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split306 0 1 2 100 5200.bed.split306.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split307 0 1 2 100 5200.bed.split307.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split308 0 1 2 100 5200.bed.split308.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split309 0 1 2 100 5200.bed.split309.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split31 0 1 2 100 5200.bed.split31.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split310 0 1 2 100 5200.bed.split310.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split311 0 1 2 100 5200.bed.split311.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split312 0 1 2 100 5200.bed.split312.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split313 0 1 2 100 5200.bed.split313.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split314 0 1 2 100 5200.bed.split314.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split315 0 1 2 100 5200.bed.split315.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split316 0 1 2 100 5200.bed.split316.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split317 0 1 2 100 5200.bed.split317.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split318 0 1 2 100 5200.bed.split318.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split319 0 1 2 100 5200.bed.split319.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split32 0 1 2 100 5200.bed.split32.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split320 0 1 2 100 5200.bed.split320.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split321 0 1 2 100 5200.bed.split321.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split322 0 1 2 100 5200.bed.split322.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split323 0 1 2 100 5200.bed.split323.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split324 0 1 2 100 5200.bed.split324.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split325 0 1 2 100 5200.bed.split325.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split326 0 1 2 100 5200.bed.split326.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split327 0 1 2 100 5200.bed.split327.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split328 0 1 2 100 5200.bed.split328.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split329 0 1 2 100 5200.bed.split329.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split33 0 1 2 100 5200.bed.split33.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split330 0 1 2 100 5200.bed.split330.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split331 0 1 2 100 5200.bed.split331.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split332 0 1 2 100 5200.bed.split332.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split333 0 1 2 100 5200.bed.split333.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split334 0 1 2 100 5200.bed.split334.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split335 0 1 2 100 5200.bed.split335.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split336 0 1 2 100 5200.bed.split336.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split337 0 1 2 100 5200.bed.split337.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split338 0 1 2 100 5200.bed.split338.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split339 0 1 2 100 5200.bed.split339.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split34 0 1 2 100 5200.bed.split34.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split340 0 1 2 100 5200.bed.split340.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split341 0 1 2 100 5200.bed.split341.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split342 0 1 2 100 5200.bed.split342.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split343 0 1 2 100 5200.bed.split343.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split344 0 1 2 100 5200.bed.split344.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split345 0 1 2 100 5200.bed.split345.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split346 0 1 2 100 5200.bed.split346.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split347 0 1 2 100 5200.bed.split347.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split348 0 1 2 100 5200.bed.split348.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split349 0 1 2 100 5200.bed.split349.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split35 0 1 2 100 5200.bed.split35.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split350 0 1 2 100 5200.bed.split350.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split351 0 1 2 100 5200.bed.split351.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split352 0 1 2 100 5200.bed.split352.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split353 0 1 2 100 5200.bed.split353.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split354 0 1 2 100 5200.bed.split354.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split355 0 1 2 100 5200.bed.split355.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split356 0 1 2 100 5200.bed.split356.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split357 0 1 2 100 5200.bed.split357.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split358 0 1 2 100 5200.bed.split358.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split359 0 1 2 100 5200.bed.split359.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split36 0 1 2 100 5200.bed.split36.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split360 0 1 2 100 5200.bed.split360.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split361 0 1 2 100 5200.bed.split361.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split362 0 1 2 100 5200.bed.split362.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split363 0 1 2 100 5200.bed.split363.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split364 0 1 2 100 5200.bed.split364.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split365 0 1 2 100 5200.bed.split365.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split366 0 1 2 100 5200.bed.split366.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split367 0 1 2 100 5200.bed.split367.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split368 0 1 2 100 5200.bed.split368.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split369 0 1 2 100 5200.bed.split369.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split37 0 1 2 100 5200.bed.split37.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split370 0 1 2 100 5200.bed.split370.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split371 0 1 2 100 5200.bed.split371.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split372 0 1 2 100 5200.bed.split372.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split373 0 1 2 100 5200.bed.split373.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split374 0 1 2 100 5200.bed.split374.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split375 0 1 2 100 5200.bed.split375.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split376 0 1 2 100 5200.bed.split376.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split377 0 1 2 100 5200.bed.split377.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split378 0 1 2 100 5200.bed.split378.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split379 0 1 2 100 5200.bed.split379.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split38 0 1 2 100 5200.bed.split38.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split380 0 1 2 100 5200.bed.split380.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split381 0 1 2 100 5200.bed.split381.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split382 0 1 2 100 5200.bed.split382.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split383 0 1 2 100 5200.bed.split383.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split384 0 1 2 100 5200.bed.split384.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split385 0 1 2 100 5200.bed.split385.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split386 0 1 2 100 5200.bed.split386.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split387 0 1 2 100 5200.bed.split387.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split388 0 1 2 100 5200.bed.split388.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split389 0 1 2 100 5200.bed.split389.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split39 0 1 2 100 5200.bed.split39.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split390 0 1 2 100 5200.bed.split390.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split391 0 1 2 100 5200.bed.split391.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split392 0 1 2 100 5200.bed.split392.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split393 0 1 2 100 5200.bed.split393.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split394 0 1 2 100 5200.bed.split394.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split395 0 1 2 100 5200.bed.split395.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split396 0 1 2 100 5200.bed.split396.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split397 0 1 2 100 5200.bed.split397.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split398 0 1 2 100 5200.bed.split398.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split399 0 1 2 100 5200.bed.split399.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split4 0 1 2 100 5200.bed.split4.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split40 0 1 2 100 5200.bed.split40.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split400 0 1 2 100 5200.bed.split400.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split401 0 1 2 100 5200.bed.split401.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split402 0 1 2 100 5200.bed.split402.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split403 0 1 2 100 5200.bed.split403.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split404 0 1 2 100 5200.bed.split404.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split405 0 1 2 100 5200.bed.split405.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split406 0 1 2 100 5200.bed.split406.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split407 0 1 2 100 5200.bed.split407.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split408 0 1 2 100 5200.bed.split408.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split409 0 1 2 100 5200.bed.split409.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split41 0 1 2 100 5200.bed.split41.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split410 0 1 2 100 5200.bed.split410.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split411 0 1 2 100 5200.bed.split411.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split412 0 1 2 100 5200.bed.split412.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split413 0 1 2 100 5200.bed.split413.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split414 0 1 2 100 5200.bed.split414.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split415 0 1 2 100 5200.bed.split415.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split416 0 1 2 100 5200.bed.split416.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split417 0 1 2 100 5200.bed.split417.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split418 0 1 2 100 5200.bed.split418.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split419 0 1 2 100 5200.bed.split419.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split42 0 1 2 100 5200.bed.split42.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split420 0 1 2 100 5200.bed.split420.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split421 0 1 2 100 5200.bed.split421.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split422 0 1 2 100 5200.bed.split422.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split423 0 1 2 100 5200.bed.split423.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split424 0 1 2 100 5200.bed.split424.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split425 0 1 2 100 5200.bed.split425.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split426 0 1 2 100 5200.bed.split426.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split427 0 1 2 100 5200.bed.split427.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split428 0 1 2 100 5200.bed.split428.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split429 0 1 2 100 5200.bed.split429.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split43 0 1 2 100 5200.bed.split43.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split430 0 1 2 100 5200.bed.split430.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split431 0 1 2 100 5200.bed.split431.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split432 0 1 2 100 5200.bed.split432.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split433 0 1 2 100 5200.bed.split433.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split434 0 1 2 100 5200.bed.split434.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split435 0 1 2 100 5200.bed.split435.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split436 0 1 2 100 5200.bed.split436.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split437 0 1 2 100 5200.bed.split437.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split438 0 1 2 100 5200.bed.split438.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split439 0 1 2 100 5200.bed.split439.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split44 0 1 2 100 5200.bed.split44.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split440 0 1 2 100 5200.bed.split440.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split441 0 1 2 100 5200.bed.split441.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split442 0 1 2 100 5200.bed.split442.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split443 0 1 2 100 5200.bed.split443.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split444 0 1 2 100 5200.bed.split444.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split445 0 1 2 100 5200.bed.split445.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split446 0 1 2 100 5200.bed.split446.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split447 0 1 2 100 5200.bed.split447.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split448 0 1 2 100 5200.bed.split448.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split449 0 1 2 100 5200.bed.split449.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split45 0 1 2 100 5200.bed.split45.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split450 0 1 2 100 5200.bed.split450.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split451 0 1 2 100 5200.bed.split451.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split452 0 1 2 100 5200.bed.split452.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split453 0 1 2 100 5200.bed.split453.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split454 0 1 2 100 5200.bed.split454.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split455 0 1 2 100 5200.bed.split455.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split456 0 1 2 100 5200.bed.split456.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split457 0 1 2 100 5200.bed.split457.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split458 0 1 2 100 5200.bed.split458.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split459 0 1 2 100 5200.bed.split459.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split46 0 1 2 100 5200.bed.split46.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split460 0 1 2 100 5200.bed.split460.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split461 0 1 2 100 5200.bed.split461.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split462 0 1 2 100 5200.bed.split462.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split463 0 1 2 100 5200.bed.split463.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split464 0 1 2 100 5200.bed.split464.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split465 0 1 2 100 5200.bed.split465.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split466 0 1 2 100 5200.bed.split466.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split467 0 1 2 100 5200.bed.split467.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split468 0 1 2 100 5200.bed.split468.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split469 0 1 2 100 5200.bed.split469.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split47 0 1 2 100 5200.bed.split47.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split470 0 1 2 100 5200.bed.split470.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split471 0 1 2 100 5200.bed.split471.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split472 0 1 2 100 5200.bed.split472.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split473 0 1 2 100 5200.bed.split473.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split474 0 1 2 100 5200.bed.split474.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split475 0 1 2 100 5200.bed.split475.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split476 0 1 2 100 5200.bed.split476.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split477 0 1 2 100 5200.bed.split477.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split478 0 1 2 100 5200.bed.split478.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split479 0 1 2 100 5200.bed.split479.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split48 0 1 2 100 5200.bed.split48.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split480 0 1 2 100 5200.bed.split480.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split481 0 1 2 100 5200.bed.split481.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split482 0 1 2 100 5200.bed.split482.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split483 0 1 2 100 5200.bed.split483.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split484 0 1 2 100 5200.bed.split484.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split485 0 1 2 100 5200.bed.split485.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split486 0 1 2 100 5200.bed.split486.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split487 0 1 2 100 5200.bed.split487.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split488 0 1 2 100 5200.bed.split488.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split489 0 1 2 100 5200.bed.split489.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split49 0 1 2 100 5200.bed.split49.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split490 0 1 2 100 5200.bed.split490.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split491 0 1 2 100 5200.bed.split491.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split492 0 1 2 100 5200.bed.split492.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split493 0 1 2 100 5200.bed.split493.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split494 0 1 2 100 5200.bed.split494.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split495 0 1 2 100 5200.bed.split495.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split496 0 1 2 100 5200.bed.split496.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split497 0 1 2 100 5200.bed.split497.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split498 0 1 2 100 5200.bed.split498.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split499 0 1 2 100 5200.bed.split499.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split5 0 1 2 100 5200.bed.split5.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split50 0 1 2 100 5200.bed.split50.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split500 0 1 2 100 5200.bed.split500.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split501 0 1 2 100 5200.bed.split501.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split502 0 1 2 100 5200.bed.split502.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split503 0 1 2 100 5200.bed.split503.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split504 0 1 2 100 5200.bed.split504.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split505 0 1 2 100 5200.bed.split505.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split506 0 1 2 100 5200.bed.split506.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split507 0 1 2 100 5200.bed.split507.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split508 0 1 2 100 5200.bed.split508.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split509 0 1 2 100 5200.bed.split509.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split51 0 1 2 100 5200.bed.split51.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split510 0 1 2 100 5200.bed.split510.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split511 0 1 2 100 5200.bed.split511.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split512 0 1 2 100 5200.bed.split512.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split513 0 1 2 100 5200.bed.split513.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split514 0 1 2 100 5200.bed.split514.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split515 0 1 2 100 5200.bed.split515.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split516 0 1 2 100 5200.bed.split516.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split517 0 1 2 100 5200.bed.split517.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split518 0 1 2 100 5200.bed.split518.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split519 0 1 2 100 5200.bed.split519.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split52 0 1 2 100 5200.bed.split52.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split520 0 1 2 100 5200.bed.split520.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split521 0 1 2 100 5200.bed.split521.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split522 0 1 2 100 5200.bed.split522.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split523 0 1 2 100 5200.bed.split523.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split524 0 1 2 100 5200.bed.split524.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split525 0 1 2 100 5200.bed.split525.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split526 0 1 2 100 5200.bed.split526.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split527 0 1 2 100 5200.bed.split527.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split528 0 1 2 100 5200.bed.split528.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split529 0 1 2 100 5200.bed.split529.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split53 0 1 2 100 5200.bed.split53.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split530 0 1 2 100 5200.bed.split530.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split531 0 1 2 100 5200.bed.split531.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split532 0 1 2 100 5200.bed.split532.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split533 0 1 2 100 5200.bed.split533.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split534 0 1 2 100 5200.bed.split534.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split535 0 1 2 100 5200.bed.split535.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split536 0 1 2 100 5200.bed.split536.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split537 0 1 2 100 5200.bed.split537.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split538 0 1 2 100 5200.bed.split538.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split539 0 1 2 100 5200.bed.split539.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split54 0 1 2 100 5200.bed.split54.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split540 0 1 2 100 5200.bed.split540.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split541 0 1 2 100 5200.bed.split541.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split542 0 1 2 100 5200.bed.split542.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split543 0 1 2 100 5200.bed.split543.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split544 0 1 2 100 5200.bed.split544.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split545 0 1 2 100 5200.bed.split545.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split546 0 1 2 100 5200.bed.split546.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split547 0 1 2 100 5200.bed.split547.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split548 0 1 2 100 5200.bed.split548.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split549 0 1 2 100 5200.bed.split549.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split55 0 1 2 100 5200.bed.split55.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split550 0 1 2 100 5200.bed.split550.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split551 0 1 2 100 5200.bed.split551.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split552 0 1 2 100 5200.bed.split552.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split553 0 1 2 100 5200.bed.split553.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split554 0 1 2 100 5200.bed.split554.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split555 0 1 2 100 5200.bed.split555.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split556 0 1 2 100 5200.bed.split556.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split557 0 1 2 100 5200.bed.split557.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split558 0 1 2 100 5200.bed.split558.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split559 0 1 2 100 5200.bed.split559.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split56 0 1 2 100 5200.bed.split56.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split560 0 1 2 100 5200.bed.split560.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split561 0 1 2 100 5200.bed.split561.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split562 0 1 2 100 5200.bed.split562.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split563 0 1 2 100 5200.bed.split563.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split564 0 1 2 100 5200.bed.split564.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split565 0 1 2 100 5200.bed.split565.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split566 0 1 2 100 5200.bed.split566.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split567 0 1 2 100 5200.bed.split567.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split568 0 1 2 100 5200.bed.split568.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split569 0 1 2 100 5200.bed.split569.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split57 0 1 2 100 5200.bed.split57.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split570 0 1 2 100 5200.bed.split570.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split571 0 1 2 100 5200.bed.split571.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split572 0 1 2 100 5200.bed.split572.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split573 0 1 2 100 5200.bed.split573.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split574 0 1 2 100 5200.bed.split574.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split575 0 1 2 100 5200.bed.split575.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split576 0 1 2 100 5200.bed.split576.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split577 0 1 2 100 5200.bed.split577.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split578 0 1 2 100 5200.bed.split578.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split579 0 1 2 100 5200.bed.split579.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split58 0 1 2 100 5200.bed.split58.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split580 0 1 2 100 5200.bed.split580.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split581 0 1 2 100 5200.bed.split581.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split582 0 1 2 100 5200.bed.split582.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split583 0 1 2 100 5200.bed.split583.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split584 0 1 2 100 5200.bed.split584.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split585 0 1 2 100 5200.bed.split585.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split586 0 1 2 100 5200.bed.split586.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split587 0 1 2 100 5200.bed.split587.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split588 0 1 2 100 5200.bed.split588.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split589 0 1 2 100 5200.bed.split589.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split59 0 1 2 100 5200.bed.split59.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split590 0 1 2 100 5200.bed.split590.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split591 0 1 2 100 5200.bed.split591.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split592 0 1 2 100 5200.bed.split592.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split593 0 1 2 100 5200.bed.split593.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split594 0 1 2 100 5200.bed.split594.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split595 0 1 2 100 5200.bed.split595.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split596 0 1 2 100 5200.bed.split596.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split597 0 1 2 100 5200.bed.split597.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split598 0 1 2 100 5200.bed.split598.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split599 0 1 2 100 5200.bed.split599.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split6 0 1 2 100 5200.bed.split6.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split60 0 1 2 100 5200.bed.split60.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split600 0 1 2 100 5200.bed.split600.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split601 0 1 2 100 5200.bed.split601.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split602 0 1 2 100 5200.bed.split602.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split603 0 1 2 100 5200.bed.split603.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split604 0 1 2 100 5200.bed.split604.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split605 0 1 2 100 5200.bed.split605.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split606 0 1 2 100 5200.bed.split606.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split607 0 1 2 100 5200.bed.split607.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split608 0 1 2 100 5200.bed.split608.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split609 0 1 2 100 5200.bed.split609.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split61 0 1 2 100 5200.bed.split61.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split610 0 1 2 100 5200.bed.split610.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split611 0 1 2 100 5200.bed.split611.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split612 0 1 2 100 5200.bed.split612.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split613 0 1 2 100 5200.bed.split613.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split614 0 1 2 100 5200.bed.split614.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split615 0 1 2 100 5200.bed.split615.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split616 0 1 2 100 5200.bed.split616.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split617 0 1 2 100 5200.bed.split617.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split618 0 1 2 100 5200.bed.split618.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split619 0 1 2 100 5200.bed.split619.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split62 0 1 2 100 5200.bed.split62.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split620 0 1 2 100 5200.bed.split620.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split621 0 1 2 100 5200.bed.split621.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split622 0 1 2 100 5200.bed.split622.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split623 0 1 2 100 5200.bed.split623.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split624 0 1 2 100 5200.bed.split624.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split625 0 1 2 100 5200.bed.split625.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split626 0 1 2 100 5200.bed.split626.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split627 0 1 2 100 5200.bed.split627.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split628 0 1 2 100 5200.bed.split628.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split629 0 1 2 100 5200.bed.split629.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split63 0 1 2 100 5200.bed.split63.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split630 0 1 2 100 5200.bed.split630.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split631 0 1 2 100 5200.bed.split631.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split632 0 1 2 100 5200.bed.split632.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split633 0 1 2 100 5200.bed.split633.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split634 0 1 2 100 5200.bed.split634.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split635 0 1 2 100 5200.bed.split635.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split636 0 1 2 100 5200.bed.split636.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split637 0 1 2 100 5200.bed.split637.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split638 0 1 2 100 5200.bed.split638.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split639 0 1 2 100 5200.bed.split639.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split64 0 1 2 100 5200.bed.split64.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split640 0 1 2 100 5200.bed.split640.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split641 0 1 2 100 5200.bed.split641.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split642 0 1 2 100 5200.bed.split642.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split643 0 1 2 100 5200.bed.split643.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split644 0 1 2 100 5200.bed.split644.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split645 0 1 2 100 5200.bed.split645.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split646 0 1 2 100 5200.bed.split646.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split647 0 1 2 100 5200.bed.split647.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split648 0 1 2 100 5200.bed.split648.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split649 0 1 2 100 5200.bed.split649.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split65 0 1 2 100 5200.bed.split65.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split650 0 1 2 100 5200.bed.split650.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split651 0 1 2 100 5200.bed.split651.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split652 0 1 2 100 5200.bed.split652.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split653 0 1 2 100 5200.bed.split653.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split654 0 1 2 100 5200.bed.split654.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split655 0 1 2 100 5200.bed.split655.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split656 0 1 2 100 5200.bed.split656.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split657 0 1 2 100 5200.bed.split657.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split658 0 1 2 100 5200.bed.split658.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split659 0 1 2 100 5200.bed.split659.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split66 0 1 2 100 5200.bed.split66.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split660 0 1 2 100 5200.bed.split660.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split661 0 1 2 100 5200.bed.split661.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split662 0 1 2 100 5200.bed.split662.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split663 0 1 2 100 5200.bed.split663.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split664 0 1 2 100 5200.bed.split664.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split665 0 1 2 100 5200.bed.split665.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split666 0 1 2 100 5200.bed.split666.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split667 0 1 2 100 5200.bed.split667.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split668 0 1 2 100 5200.bed.split668.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split669 0 1 2 100 5200.bed.split669.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split67 0 1 2 100 5200.bed.split67.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split670 0 1 2 100 5200.bed.split670.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split671 0 1 2 100 5200.bed.split671.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split672 0 1 2 100 5200.bed.split672.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split673 0 1 2 100 5200.bed.split673.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split674 0 1 2 100 5200.bed.split674.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split675 0 1 2 100 5200.bed.split675.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split676 0 1 2 100 5200.bed.split676.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split677 0 1 2 100 5200.bed.split677.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split678 0 1 2 100 5200.bed.split678.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split679 0 1 2 100 5200.bed.split679.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split68 0 1 2 100 5200.bed.split68.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split680 0 1 2 100 5200.bed.split680.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split681 0 1 2 100 5200.bed.split681.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split682 0 1 2 100 5200.bed.split682.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split683 0 1 2 100 5200.bed.split683.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split684 0 1 2 100 5200.bed.split684.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split685 0 1 2 100 5200.bed.split685.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split686 0 1 2 100 5200.bed.split686.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split687 0 1 2 100 5200.bed.split687.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split688 0 1 2 100 5200.bed.split688.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split689 0 1 2 100 5200.bed.split689.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split69 0 1 2 100 5200.bed.split69.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split690 0 1 2 100 5200.bed.split690.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split691 0 1 2 100 5200.bed.split691.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split692 0 1 2 100 5200.bed.split692.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split693 0 1 2 100 5200.bed.split693.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split694 0 1 2 100 5200.bed.split694.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split695 0 1 2 100 5200.bed.split695.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split696 0 1 2 100 5200.bed.split696.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split697 0 1 2 100 5200.bed.split697.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split698 0 1 2 100 5200.bed.split698.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split699 0 1 2 100 5200.bed.split699.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split7 0 1 2 100 5200.bed.split7.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split70 0 1 2 100 5200.bed.split70.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split700 0 1 2 100 5200.bed.split700.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split701 0 1 2 100 5200.bed.split701.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split702 0 1 2 100 5200.bed.split702.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split703 0 1 2 100 5200.bed.split703.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split704 0 1 2 100 5200.bed.split704.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split705 0 1 2 100 5200.bed.split705.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split706 0 1 2 100 5200.bed.split706.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split707 0 1 2 100 5200.bed.split707.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split708 0 1 2 100 5200.bed.split708.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split709 0 1 2 100 5200.bed.split709.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split71 0 1 2 100 5200.bed.split71.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split710 0 1 2 100 5200.bed.split710.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split711 0 1 2 100 5200.bed.split711.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split712 0 1 2 100 5200.bed.split712.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split713 0 1 2 100 5200.bed.split713.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split714 0 1 2 100 5200.bed.split714.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split715 0 1 2 100 5200.bed.split715.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split716 0 1 2 100 5200.bed.split716.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split717 0 1 2 100 5200.bed.split717.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split718 0 1 2 100 5200.bed.split718.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split719 0 1 2 100 5200.bed.split719.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split72 0 1 2 100 5200.bed.split72.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split720 0 1 2 100 5200.bed.split720.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split721 0 1 2 100 5200.bed.split721.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split722 0 1 2 100 5200.bed.split722.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split723 0 1 2 100 5200.bed.split723.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split724 0 1 2 100 5200.bed.split724.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split725 0 1 2 100 5200.bed.split725.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split726 0 1 2 100 5200.bed.split726.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split727 0 1 2 100 5200.bed.split727.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split728 0 1 2 100 5200.bed.split728.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split729 0 1 2 100 5200.bed.split729.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split73 0 1 2 100 5200.bed.split73.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split730 0 1 2 100 5200.bed.split730.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split731 0 1 2 100 5200.bed.split731.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split732 0 1 2 100 5200.bed.split732.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split733 0 1 2 100 5200.bed.split733.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split734 0 1 2 100 5200.bed.split734.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split735 0 1 2 100 5200.bed.split735.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split736 0 1 2 100 5200.bed.split736.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split737 0 1 2 100 5200.bed.split737.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split738 0 1 2 100 5200.bed.split738.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split739 0 1 2 100 5200.bed.split739.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split74 0 1 2 100 5200.bed.split74.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split740 0 1 2 100 5200.bed.split740.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split741 0 1 2 100 5200.bed.split741.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split742 0 1 2 100 5200.bed.split742.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split743 0 1 2 100 5200.bed.split743.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split744 0 1 2 100 5200.bed.split744.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split745 0 1 2 100 5200.bed.split745.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split746 0 1 2 100 5200.bed.split746.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split747 0 1 2 100 5200.bed.split747.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split748 0 1 2 100 5200.bed.split748.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split749 0 1 2 100 5200.bed.split749.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split75 0 1 2 100 5200.bed.split75.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split750 0 1 2 100 5200.bed.split750.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split751 0 1 2 100 5200.bed.split751.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split752 0 1 2 100 5200.bed.split752.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split753 0 1 2 100 5200.bed.split753.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split754 0 1 2 100 5200.bed.split754.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split755 0 1 2 100 5200.bed.split755.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split756 0 1 2 100 5200.bed.split756.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split757 0 1 2 100 5200.bed.split757.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split758 0 1 2 100 5200.bed.split758.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split759 0 1 2 100 5200.bed.split759.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split76 0 1 2 100 5200.bed.split76.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split760 0 1 2 100 5200.bed.split760.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split761 0 1 2 100 5200.bed.split761.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split762 0 1 2 100 5200.bed.split762.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split763 0 1 2 100 5200.bed.split763.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split764 0 1 2 100 5200.bed.split764.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split765 0 1 2 100 5200.bed.split765.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split766 0 1 2 100 5200.bed.split766.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split767 0 1 2 100 5200.bed.split767.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split768 0 1 2 100 5200.bed.split768.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split769 0 1 2 100 5200.bed.split769.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split77 0 1 2 100 5200.bed.split77.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split770 0 1 2 100 5200.bed.split770.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split771 0 1 2 100 5200.bed.split771.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split772 0 1 2 100 5200.bed.split772.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split773 0 1 2 100 5200.bed.split773.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split774 0 1 2 100 5200.bed.split774.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split775 0 1 2 100 5200.bed.split775.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split776 0 1 2 100 5200.bed.split776.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split777 0 1 2 100 5200.bed.split777.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split778 0 1 2 100 5200.bed.split778.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split779 0 1 2 100 5200.bed.split779.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split78 0 1 2 100 5200.bed.split78.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split780 0 1 2 100 5200.bed.split780.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split781 0 1 2 100 5200.bed.split781.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split782 0 1 2 100 5200.bed.split782.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split783 0 1 2 100 5200.bed.split783.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split784 0 1 2 100 5200.bed.split784.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split785 0 1 2 100 5200.bed.split785.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split786 0 1 2 100 5200.bed.split786.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split787 0 1 2 100 5200.bed.split787.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split788 0 1 2 100 5200.bed.split788.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split789 0 1 2 100 5200.bed.split789.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split79 0 1 2 100 5200.bed.split79.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split790 0 1 2 100 5200.bed.split790.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split791 0 1 2 100 5200.bed.split791.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split792 0 1 2 100 5200.bed.split792.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split793 0 1 2 100 5200.bed.split793.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split794 0 1 2 100 5200.bed.split794.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split795 0 1 2 100 5200.bed.split795.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split796 0 1 2 100 5200.bed.split796.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split797 0 1 2 100 5200.bed.split797.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split798 0 1 2 100 5200.bed.split798.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split799 0 1 2 100 5200.bed.split799.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split8 0 1 2 100 5200.bed.split8.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split80 0 1 2 100 5200.bed.split80.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split800 0 1 2 100 5200.bed.split800.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split801 0 1 2 100 5200.bed.split801.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split802 0 1 2 100 5200.bed.split802.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split803 0 1 2 100 5200.bed.split803.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split804 0 1 2 100 5200.bed.split804.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split805 0 1 2 100 5200.bed.split805.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split806 0 1 2 100 5200.bed.split806.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split807 0 1 2 100 5200.bed.split807.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split808 0 1 2 100 5200.bed.split808.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split809 0 1 2 100 5200.bed.split809.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split81 0 1 2 100 5200.bed.split81.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split810 0 1 2 100 5200.bed.split810.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split811 0 1 2 100 5200.bed.split811.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split812 0 1 2 100 5200.bed.split812.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split813 0 1 2 100 5200.bed.split813.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split814 0 1 2 100 5200.bed.split814.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split815 0 1 2 100 5200.bed.split815.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split816 0 1 2 100 5200.bed.split816.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split817 0 1 2 100 5200.bed.split817.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split818 0 1 2 100 5200.bed.split818.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split819 0 1 2 100 5200.bed.split819.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split82 0 1 2 100 5200.bed.split82.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split820 0 1 2 100 5200.bed.split820.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split821 0 1 2 100 5200.bed.split821.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split822 0 1 2 100 5200.bed.split822.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split823 0 1 2 100 5200.bed.split823.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split824 0 1 2 100 5200.bed.split824.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split825 0 1 2 100 5200.bed.split825.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split826 0 1 2 100 5200.bed.split826.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split827 0 1 2 100 5200.bed.split827.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split828 0 1 2 100 5200.bed.split828.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split829 0 1 2 100 5200.bed.split829.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split83 0 1 2 100 5200.bed.split83.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split830 0 1 2 100 5200.bed.split830.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split831 0 1 2 100 5200.bed.split831.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split832 0 1 2 100 5200.bed.split832.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split833 0 1 2 100 5200.bed.split833.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split834 0 1 2 100 5200.bed.split834.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split835 0 1 2 100 5200.bed.split835.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split836 0 1 2 100 5200.bed.split836.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split837 0 1 2 100 5200.bed.split837.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split838 0 1 2 100 5200.bed.split838.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split839 0 1 2 100 5200.bed.split839.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split84 0 1 2 100 5200.bed.split84.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split840 0 1 2 100 5200.bed.split840.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split841 0 1 2 100 5200.bed.split841.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split842 0 1 2 100 5200.bed.split842.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split843 0 1 2 100 5200.bed.split843.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split844 0 1 2 100 5200.bed.split844.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split845 0 1 2 100 5200.bed.split845.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split846 0 1 2 100 5200.bed.split846.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split847 0 1 2 100 5200.bed.split847.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split848 0 1 2 100 5200.bed.split848.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split849 0 1 2 100 5200.bed.split849.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split85 0 1 2 100 5200.bed.split85.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split850 0 1 2 100 5200.bed.split850.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split851 0 1 2 100 5200.bed.split851.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split852 0 1 2 100 5200.bed.split852.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split853 0 1 2 100 5200.bed.split853.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split854 0 1 2 100 5200.bed.split854.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split855 0 1 2 100 5200.bed.split855.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split856 0 1 2 100 5200.bed.split856.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split857 0 1 2 100 5200.bed.split857.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split858 0 1 2 100 5200.bed.split858.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split859 0 1 2 100 5200.bed.split859.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split86 0 1 2 100 5200.bed.split86.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split860 0 1 2 100 5200.bed.split860.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split861 0 1 2 100 5200.bed.split861.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split862 0 1 2 100 5200.bed.split862.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split863 0 1 2 100 5200.bed.split863.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split864 0 1 2 100 5200.bed.split864.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split865 0 1 2 100 5200.bed.split865.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split866 0 1 2 100 5200.bed.split866.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split867 0 1 2 100 5200.bed.split867.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split868 0 1 2 100 5200.bed.split868.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split869 0 1 2 100 5200.bed.split869.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split87 0 1 2 100 5200.bed.split87.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split870 0 1 2 100 5200.bed.split870.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split871 0 1 2 100 5200.bed.split871.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split872 0 1 2 100 5200.bed.split872.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split873 0 1 2 100 5200.bed.split873.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split874 0 1 2 100 5200.bed.split874.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split875 0 1 2 100 5200.bed.split875.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split876 0 1 2 100 5200.bed.split876.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split877 0 1 2 100 5200.bed.split877.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split878 0 1 2 100 5200.bed.split878.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split879 0 1 2 100 5200.bed.split879.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split88 0 1 2 100 5200.bed.split88.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split880 0 1 2 100 5200.bed.split880.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split881 0 1 2 100 5200.bed.split881.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split882 0 1 2 100 5200.bed.split882.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split883 0 1 2 100 5200.bed.split883.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split884 0 1 2 100 5200.bed.split884.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split885 0 1 2 100 5200.bed.split885.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split886 0 1 2 100 5200.bed.split886.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split887 0 1 2 100 5200.bed.split887.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split888 0 1 2 100 5200.bed.split888.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split889 0 1 2 100 5200.bed.split889.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split89 0 1 2 100 5200.bed.split89.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split890 0 1 2 100 5200.bed.split890.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split891 0 1 2 100 5200.bed.split891.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split892 0 1 2 100 5200.bed.split892.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split893 0 1 2 100 5200.bed.split893.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split894 0 1 2 100 5200.bed.split894.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split895 0 1 2 100 5200.bed.split895.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split896 0 1 2 100 5200.bed.split896.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split897 0 1 2 100 5200.bed.split897.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split898 0 1 2 100 5200.bed.split898.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split899 0 1 2 100 5200.bed.split899.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split9 0 1 2 100 5200.bed.split9.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split90 0 1 2 100 5200.bed.split90.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split900 0 1 2 100 5200.bed.split900.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split901 0 1 2 100 5200.bed.split901.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split902 0 1 2 100 5200.bed.split902.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split903 0 1 2 100 5200.bed.split903.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split904 0 1 2 100 5200.bed.split904.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split905 0 1 2 100 5200.bed.split905.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split906 0 1 2 100 5200.bed.split906.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split907 0 1 2 100 5200.bed.split907.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split908 0 1 2 100 5200.bed.split908.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split909 0 1 2 100 5200.bed.split909.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split91 0 1 2 100 5200.bed.split91.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split910 0 1 2 100 5200.bed.split910.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split911 0 1 2 100 5200.bed.split911.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split912 0 1 2 100 5200.bed.split912.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split913 0 1 2 100 5200.bed.split913.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split914 0 1 2 100 5200.bed.split914.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split915 0 1 2 100 5200.bed.split915.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split916 0 1 2 100 5200.bed.split916.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split917 0 1 2 100 5200.bed.split917.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split918 0 1 2 100 5200.bed.split918.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split919 0 1 2 100 5200.bed.split919.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split92 0 1 2 100 5200.bed.split92.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split920 0 1 2 100 5200.bed.split920.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split921 0 1 2 100 5200.bed.split921.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split922 0 1 2 100 5200.bed.split922.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split923 0 1 2 100 5200.bed.split923.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split924 0 1 2 100 5200.bed.split924.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split925 0 1 2 100 5200.bed.split925.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split926 0 1 2 100 5200.bed.split926.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split927 0 1 2 100 5200.bed.split927.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split928 0 1 2 100 5200.bed.split928.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split929 0 1 2 100 5200.bed.split929.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split93 0 1 2 100 5200.bed.split93.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split94 0 1 2 100 5200.bed.split94.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split95 0 1 2 100 5200.bed.split95.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split96 0 1 2 100 5200.bed.split96.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split97 0 1 2 100 5200.bed.split97.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split98 0 1 2 100 5200.bed.split98.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 5200.bed.split99 0 1 2 100 5200.bed.split99.NMI