python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split0 0 1 2 100 400200.bed.split0.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split1 0 1 2 100 400200.bed.split1.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split10 0 1 2 100 400200.bed.split10.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split100 0 1 2 100 400200.bed.split100.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split101 0 1 2 100 400200.bed.split101.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split102 0 1 2 100 400200.bed.split102.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split103 0 1 2 100 400200.bed.split103.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split104 0 1 2 100 400200.bed.split104.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split105 0 1 2 100 400200.bed.split105.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split106 0 1 2 100 400200.bed.split106.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split107 0 1 2 100 400200.bed.split107.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split108 0 1 2 100 400200.bed.split108.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split109 0 1 2 100 400200.bed.split109.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split11 0 1 2 100 400200.bed.split11.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split110 0 1 2 100 400200.bed.split110.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split111 0 1 2 100 400200.bed.split111.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split112 0 1 2 100 400200.bed.split112.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split113 0 1 2 100 400200.bed.split113.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split114 0 1 2 100 400200.bed.split114.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split115 0 1 2 100 400200.bed.split115.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split116 0 1 2 100 400200.bed.split116.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split117 0 1 2 100 400200.bed.split117.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split12 0 1 2 100 400200.bed.split12.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split13 0 1 2 100 400200.bed.split13.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split14 0 1 2 100 400200.bed.split14.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split15 0 1 2 100 400200.bed.split15.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split16 0 1 2 100 400200.bed.split16.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split17 0 1 2 100 400200.bed.split17.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split18 0 1 2 100 400200.bed.split18.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split19 0 1 2 100 400200.bed.split19.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split2 0 1 2 100 400200.bed.split2.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split20 0 1 2 100 400200.bed.split20.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split21 0 1 2 100 400200.bed.split21.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split22 0 1 2 100 400200.bed.split22.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split23 0 1 2 100 400200.bed.split23.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split24 0 1 2 100 400200.bed.split24.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split25 0 1 2 100 400200.bed.split25.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split26 0 1 2 100 400200.bed.split26.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split27 0 1 2 100 400200.bed.split27.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split28 0 1 2 100 400200.bed.split28.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split29 0 1 2 100 400200.bed.split29.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split3 0 1 2 100 400200.bed.split3.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split30 0 1 2 100 400200.bed.split30.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split31 0 1 2 100 400200.bed.split31.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split32 0 1 2 100 400200.bed.split32.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split33 0 1 2 100 400200.bed.split33.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split34 0 1 2 100 400200.bed.split34.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split35 0 1 2 100 400200.bed.split35.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split36 0 1 2 100 400200.bed.split36.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split37 0 1 2 100 400200.bed.split37.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split38 0 1 2 100 400200.bed.split38.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split39 0 1 2 100 400200.bed.split39.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split4 0 1 2 100 400200.bed.split4.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split40 0 1 2 100 400200.bed.split40.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split41 0 1 2 100 400200.bed.split41.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split42 0 1 2 100 400200.bed.split42.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split43 0 1 2 100 400200.bed.split43.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split44 0 1 2 100 400200.bed.split44.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split45 0 1 2 100 400200.bed.split45.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split46 0 1 2 100 400200.bed.split46.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split47 0 1 2 100 400200.bed.split47.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split48 0 1 2 100 400200.bed.split48.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split49 0 1 2 100 400200.bed.split49.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split5 0 1 2 100 400200.bed.split5.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split50 0 1 2 100 400200.bed.split50.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split51 0 1 2 100 400200.bed.split51.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split52 0 1 2 100 400200.bed.split52.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split53 0 1 2 100 400200.bed.split53.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split54 0 1 2 100 400200.bed.split54.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split55 0 1 2 100 400200.bed.split55.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split56 0 1 2 100 400200.bed.split56.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split57 0 1 2 100 400200.bed.split57.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split58 0 1 2 100 400200.bed.split58.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split59 0 1 2 100 400200.bed.split59.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split6 0 1 2 100 400200.bed.split6.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split60 0 1 2 100 400200.bed.split60.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split61 0 1 2 100 400200.bed.split61.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split62 0 1 2 100 400200.bed.split62.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split63 0 1 2 100 400200.bed.split63.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split64 0 1 2 100 400200.bed.split64.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split65 0 1 2 100 400200.bed.split65.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split66 0 1 2 100 400200.bed.split66.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split67 0 1 2 100 400200.bed.split67.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split68 0 1 2 100 400200.bed.split68.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split69 0 1 2 100 400200.bed.split69.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split7 0 1 2 100 400200.bed.split7.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split70 0 1 2 100 400200.bed.split70.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split71 0 1 2 100 400200.bed.split71.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split72 0 1 2 100 400200.bed.split72.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split73 0 1 2 100 400200.bed.split73.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split74 0 1 2 100 400200.bed.split74.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split75 0 1 2 100 400200.bed.split75.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split76 0 1 2 100 400200.bed.split76.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split77 0 1 2 100 400200.bed.split77.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split78 0 1 2 100 400200.bed.split78.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split79 0 1 2 100 400200.bed.split79.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split8 0 1 2 100 400200.bed.split8.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split80 0 1 2 100 400200.bed.split80.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split81 0 1 2 100 400200.bed.split81.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split82 0 1 2 100 400200.bed.split82.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split83 0 1 2 100 400200.bed.split83.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split84 0 1 2 100 400200.bed.split84.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split85 0 1 2 100 400200.bed.split85.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split86 0 1 2 100 400200.bed.split86.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split87 0 1 2 100 400200.bed.split87.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split88 0 1 2 100 400200.bed.split88.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split89 0 1 2 100 400200.bed.split89.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split9 0 1 2 100 400200.bed.split9.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split90 0 1 2 100 400200.bed.split90.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split91 0 1 2 100 400200.bed.split91.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split92 0 1 2 100 400200.bed.split92.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split93 0 1 2 100 400200.bed.split93.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split94 0 1 2 100 400200.bed.split94.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split95 0 1 2 100 400200.bed.split95.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split96 0 1 2 100 400200.bed.split96.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split97 0 1 2 100 400200.bed.split97.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split98 0 1 2 100 400200.bed.split98.NMI
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix-C-BAM.py L3426-E_coli_XL-SMF_100_15uL_CseDa01.1x300mers-trimmed.bwameth.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/sequence/GCA_000005845.2_ASM584v2_genomic.fa 400200.bed.split99 0 1 2 100 400200.bed.split99.NMI