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Rscript ~/code/spp/spp_package/run_spp.R -c=L4286-HFF_4hpi_noPFA_1_Input.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4286-HFF_4hpi_noPFA_1_Input.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4287-HFF_12hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4287-HFF_12hpi_noPFA_1_Input.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4287-HFF_12hpi_noPFA_1_Input.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4287-HFF_12hpi_noPFA_1_Input.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4288-HFF_24hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4288-HFF_24hpi_noPFA_1_Input.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4289-HFF_48hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4289-HFF_48hpi_noPFA_1_Input.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4290-HFF_72hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4290-HFF_72hpi_noPFA_1_Input.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4291-HFF_96hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4291-HFF_96hpi_noPFA_1_Input.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4292-HFF_120hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4292-HFF_120hpi_noPFA_1_Input.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4292-HFF_120hpi_noPFA_1_Input.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4292-HFF_120hpi_noPFA_1_Input.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4293-HFF_72hpi_1hpiPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4293-HFF_72hpi_1hpiPFA_1_Input.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4293-HFF_72hpi_1hpiPFA_1_Input.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4293-HFF_72hpi_1hpiPFA_1_Input.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4294-HFF_72hpi_48hpiPFA_1_Input.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4294-HFF_72hpi_48hpiPFA_1_Input.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4294-HFF_72hpi_48hpiPFA_1_Input.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4294-HFF_72hpi_48hpiPFA_1_Input.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4295-HFF_4hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4295-HFF_4hpi_noPFA_1_CTCF.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4296-HFF_12hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4296-HFF_12hpi_noPFA_1_CTCF.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4297-HFF_24hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4297-HFF_24hpi_noPFA_1_CTCF.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4298-HFF_48hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4298-HFF_48hpi_noPFA_1_CTCF.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4303-HFF_72hpi_48hpiPFA_1_CTCF.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4303-HFF_72hpi_48hpiPFA_1_CTCF.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4304-HFF_4hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4304-HFF_4hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4314-HFF_12hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4314-HFF_12hpi_noPFA_1_4H8.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4321-HFF_72hpi_48hpiPFA_1_4H8.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4321-HFF_72hpi_48hpiPFA_1_4H8.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4322-HFF_4hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4322-HFF_4hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4322-HFF_4hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4322-HFF_4hpi_noPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4323-HFF_12hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4323-HFF_12hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4323-HFF_12hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4323-HFF_12hpi_noPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4324-HFF_24hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4324-HFF_24hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4324-HFF_24hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4324-HFF_24hpi_noPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4325-HFF_72hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4325-HFF_72hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4325-HFF_72hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4325-HFF_72hpi_noPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4326-HFF_96hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4326-HFF_96hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4326-HFF_96hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4326-HFF_96hpi_noPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4327-HFF_120hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4327-HFF_120hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4327-HFF_120hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4327-HFF_120hpi_noPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4330-HFF_4hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4330-HFF_4hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4330-HFF_4hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4330-HFF_4hpi_noPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4331-HFF_12hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4331-HFF_12hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4331-HFF_12hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4331-HFF_12hpi_noPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4332-HFF_24hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4332-HFF_24hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4332-HFF_24hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4332-HFF_24hpi_noPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4333-HFF_48hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4333-HFF_48hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4333-HFF_48hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4333-HFF_48hpi_noPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4334-HFF_72hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4334-HFF_72hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4334-HFF_72hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4334-HFF_72hpi_noPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4335-HFF_96hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4335-HFF_96hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4335-HFF_96hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4335-HFF_96hpi_noPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4336-HFF_120hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4336-HFF_120hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4336-HFF_120hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4336-HFF_120hpi_noPFA_1_H3K9me3.merlin.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4339-HFF_4hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4339-HFF_4hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4339-HFF_4hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4339-HFF_4hpi_noPFA_1_H3K4me1.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4340-HFF_12hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4340-HFF_12hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4340-HFF_12hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4340-HFF_12hpi_noPFA_1_H3K4me1.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4341-HFF_24hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4341-HFF_24hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4341-HFF_24hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4341-HFF_24hpi_noPFA_1_H3K4me1.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4342-HFF_48hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4342-HFF_48hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4343-HFF_72hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4343-HFF_72hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4344-HFF_96hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4344-HFF_96hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4344-HFF_96hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4344-HFF_96hpi_noPFA_1_H3K4me1.merlin.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L4345-HFF_120hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4345-HFF_120hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.hg38-male.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.hg38-male.1x36mers.QC
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