python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4131-K562_Hi-SMF.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4131-K562_Hi-SMF.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4142-sperm_SMF_first_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4142-sperm_SMF_first_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4143-sperm_SMF_first_spin_2M_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4143-sperm_SMF_first_spin_2M_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4144-sperm_SMF_second_spin_500K_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4144-sperm_SMF_second_spin_500K_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 1000 1 L4145-sperm_SMF_second_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz 2016-11-16-refFlat.TSS-profile-L4145-sperm_SMF_second_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4131-K562_Hi-SMF.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4131-K562_Hi-SMF.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4142-sperm_SMF_first_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4142-sperm_SMF_first_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4143-sperm_SMF_first_spin_2M_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4143-sperm_SMF_first_spin_2M_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4144-sperm_SMF_second_spin_500K_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4144-sperm_SMF_second_spin_500K_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2024-09-29-NextSeq/K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2.gz 2 3 5 1000 1 L4145-sperm_SMF_second_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38.allC.bedGraph.bgz K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L4145-sperm_SMF_second_spin_1M_15uL_CseDa01.1x75-trimmed.bwameth.hg38_CHH -bismark.cov &