python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3692-Leptospira_biflexa_serovar_Patoc_KAS_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1/Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1.chrom.sizes L3692-Leptospira_biflexa_serovar_Patoc_KAS_rep1.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3692-Leptospira_biflexa_serovar_Patoc_KAS_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1/Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1.chrom.sizes L3692-Leptospira_biflexa_serovar_Patoc_KAS_rep1.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3694-Leptospira_interrogans_serovar_Manilae_KAS_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Leptospira_interrogans_serovar_Manilae-ASM104763v1/Leptospira_interrogans_serovar_Manilae-ASM104763v1.chrom.sizes L3694-Leptospira_interrogans_serovar_Manilae_KAS_rep1.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3694-Leptospira_interrogans_serovar_Manilae_KAS_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Leptospira_interrogans_serovar_Manilae-ASM104763v1/Leptospira_interrogans_serovar_Manilae-ASM104763v1.chrom.sizes L3694-Leptospira_interrogans_serovar_Manilae_KAS_rep1.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3695-Leptospira_interrogans_serovar_Manilae_KAS_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Leptospira_interrogans_serovar_Manilae-ASM104763v1/Leptospira_interrogans_serovar_Manilae-ASM104763v1.chrom.sizes L3695-Leptospira_interrogans_serovar_Manilae_KAS_rep2.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3695-Leptospira_interrogans_serovar_Manilae_KAS_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Leptospira_interrogans_serovar_Manilae-ASM104763v1/Leptospira_interrogans_serovar_Manilae-ASM104763v1.chrom.sizes L3695-Leptospira_interrogans_serovar_Manilae_KAS_rep2.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3696-K562_KLF1_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3696-K562_KLF1_rep1.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3696-K562_KLF1_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3696-K562_KLF1_rep1.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3697-K562_KLF1_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3697-K562_KLF1_rep1.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3697-K562_KLF1_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3697-K562_KLF1_rep1.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3702-K562_NRSF_test_CST.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3702-K562_NRSF_test_CST.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3702-K562_NRSF_test_CST.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3702-K562_NRSF_test_CST.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3707-ATF4_ATF4pos_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3707-ATF4_ATF4pos_rep1.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3707-ATF4_ATF4pos_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3707-ATF4_ATF4pos_rep1.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3708-ATF4_ATF4pos_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3708-ATF4_ATF4pos_rep2.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3708-ATF4_ATF4pos_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3708-ATF4_ATF4pos_rep2.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3709-ATF4_GFP_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3709-ATF4_GFP_rep1.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3709-ATF4_GFP_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3709-ATF4_GFP_rep1.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3710-ATF4_GFP_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3710-ATF4_GFP_rep2.1x50mers.unique.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3710-ATF4_GFP_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3710-ATF4_GFP_rep2.1x50mers.unique.minus.wig -notitle -RPM -uniqueBAM -stranded -