/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3696-K562_KLF1_rep1.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L2880-SSBO1_K562_30min_Input/L2880-SSBO1_K562_30min_Input.2x36mers.hg38.unique.dedup.bam -n L3696-K562_KLF1_rep1.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3697-K562_KLF1_rep1.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L2880-SSBO1_K562_30min_Input/L2880-SSBO1_K562_30min_Input.2x36mers.hg38.unique.dedup.bam -n L3697-K562_KLF1_rep1.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3702-K562_NRSF_test_CST.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L2880-SSBO1_K562_30min_Input/L2880-SSBO1_K562_30min_Input.2x36mers.hg38.unique.dedup.bam -n L3702-K562_NRSF_test_CST.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L2880-SSBO1_K562_30min_Input/L2880-SSBO1_K562_30min_Input.2x36mers.hg38.unique.dedup.bam -n L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L2880-SSBO1_K562_30min_Input/L2880-SSBO1_K562_30min_Input.2x36mers.hg38.unique.dedup.bam -n L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L2880-SSBO1_K562_30min_Input/L2880-SSBO1_K562_30min_Input.2x36mers.hg38.unique.dedup.bam -n L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L2880-SSBO1_K562_30min_Input/L2880-SSBO1_K562_30min_Input.2x36mers.hg38.unique.dedup.bam -n L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3707-ATF4_ATF4pos_rep1.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L3612-Mkay_ChIRP_input_1/L3612-Mkay_ChIRP_input_1.1x50mers.unique.bam -n L3707-ATF4_ATF4pos_rep1.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3708-ATF4_ATF4pos_rep2.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L3612-Mkay_ChIRP_input_1/L3612-Mkay_ChIRP_input_1.1x50mers.unique.bam -n L3708-ATF4_ATF4pos_rep2.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3709-ATF4_GFP_rep1.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L3612-Mkay_ChIRP_input_1/L3612-Mkay_ChIRP_input_1.1x50mers.unique.bam -n L3709-ATF4_GFP_rep1.1x50mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L3710-ATF4_GFP_rep2.1x50mers.unique.bam -c /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ChIP/L3612-Mkay_ChIRP_input_1/L3612-Mkay_ChIRP_input_1.1x50mers.unique.bam -n L3710-ATF4_GFP_rep2.1x50mers.unique.MACS-2.1.0 -g hs -f BAM