python ~/code/bedRPKMfromBAM.py L3696-K562_KLF1_rep1.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3696-K562_KLF1_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3696-K562_KLF1_rep1.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3697-K562_KLF1_rep1.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3697-K562_KLF1_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3697-K562_KLF1_rep1.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3702-K562_NRSF_test_CST.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3702-K562_NRSF_test_CST.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3702-K562_NRSF_test_CST.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3707-ATF4_ATF4pos_rep1.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3707-ATF4_ATF4pos_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3707-ATF4_ATF4pos_rep1.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3708-ATF4_ATF4pos_rep2.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3708-ATF4_ATF4pos_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3708-ATF4_ATF4pos_rep2.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3709-ATF4_GFP_rep1.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3709-ATF4_GFP_rep1.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3709-ATF4_GFP_rep1.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3710-ATF4_GFP_rep2.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3710-ATF4_GFP_rep2.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3710-ATF4_GFP_rep2.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM