python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3696-K562_KLF1_rep1.1x50mers.unique.bam SAMstats-L3696-K562_KLF1_rep1.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3697-K562_KLF1_rep1.1x50mers.unique.bam SAMstats-L3697-K562_KLF1_rep1.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3702-K562_NRSF_test_CST.1x50mers.unique.bam SAMstats-L3702-K562_NRSF_test_CST.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3703-K562_NRSF_test_MA5-44189.1x50mers.unique.bam SAMstats-L3703-K562_NRSF_test_MA5-44189.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3704-K562_NRSF_test_MA5-35361.1x50mers.unique.bam SAMstats-L3704-K562_NRSF_test_MA5-35361.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3705-K562_NRSF_test_MA5-55715.1x50mers.unique.bam SAMstats-L3705-K562_NRSF_test_MA5-55715.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique.bam SAMstats-L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3707-ATF4_ATF4pos_rep1.1x50mers.unique.bam SAMstats-L3707-ATF4_ATF4pos_rep1.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3708-ATF4_ATF4pos_rep2.1x50mers.unique.bam SAMstats-L3708-ATF4_ATF4pos_rep2.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3709-ATF4_GFP_rep1.1x50mers.unique.bam SAMstats-L3709-ATF4_GFP_rep1.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L3710-ATF4_GFP_rep2.1x50mers.unique.bam SAMstats-L3710-ATF4_GFP_rep2.1x50mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired