Index of /kundaje/marinovg/oak/ENCODE4/Chromatin-nanopores/2025-03-19-NextSeq-run

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2016-11-16-refFlat.TSS-profile-L3698-K562-ChIP-SMF-CTCF.1x76.bwameth.hg38_CHH2025-03-20 20:14 94K 
[ ]2016-11-16-refFlat.TSS-profile-L3699-K562-ChIP-SMF-Pol2-4H8.1x76.bwameth.hg38_CHH2025-03-20 20:15 95K 
[ ]2016-11-16-refFlat.TSS-profile-L3700-K562-ChIP-SMF-H3K4me3.1x76.bwameth.hg38_CHH2025-03-20 20:15 96K 
[ ]2016-11-16-refFlat.TSS-profile-L3701-K562-ChIP-SMF-H3K27ac.1x76.bwameth.hg38_CHH2025-03-20 20:20 94K 
[ ]2016-11-16-refFlat.TSS-profile-L3717-K562_SMF_native_NEB_test_1M_cells_1uL_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 20:27 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3718-K562_SMF_native_NEB_test_1M_cells_5uL_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 20:27 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3719-K562_SMF_native_NEB_test_1M_cells_10uL_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 20:27 96K 
[ ]2016-11-16-refFlat.TSS-profile-L3722-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.hg38_CHH2025-03-21 05:21 93K 
[ ]2016-11-16-refFlat.TSS-profile-L3723-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01_denatured.1x76.bwameth.hg38_CHH2025-03-21 05:21 92K 
[ ]2016-11-16-refFlat.TSS-profile-L3724-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 21:50 89K 
[ ]2016-11-16-refFlat.TSS-profile-L3725-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01_denatured.1x76.bwameth.hg38_CHH2025-03-21 05:24 86K 
[ ]2024-02-25-K562-IFN-amplicons.dorado.minimap.hg38.bam2025-04-01 11:40 664  
[ ]2024-02-25-K562-NT-amplicons.dorado.minimap.hg38.bam2025-04-01 11:40 663  
[ ]2025-03-19-NextSeq-run-NRSF.pdf2025-03-21 05:09 1.5M 
[ ]2025-03-19-NextSeq-run-NRSF.pptx2025-03-21 05:09 2.1M 
[ ]ChIP_KAS.config2025-03-19 21:42 4.2K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3698-K562-ChIP-SMF-CTCF.1x76.bwameth.hg38_CHH2025-03-20 21:54 96K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3699-K562-ChIP-SMF-Pol2-4H8.1x76.bwameth.hg38_CHH2025-03-20 21:52 95K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3700-K562-ChIP-SMF-H3K4me3.1x76.bwameth.hg38_CHH2025-03-20 22:00 96K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3701-K562-ChIP-SMF-H3K27ac.1x76.bwameth.hg38_CHH2025-03-20 22:00 96K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3717-K562_SMF_native_NEB_test_1M_cells_1uL_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 22:12 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3718-K562_SMF_native_NEB_test_1M_cells_5uL_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 22:11 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3719-K562_SMF_native_NEB_test_1M_cells_10uL_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 22:51 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3722-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.hg38_CHH2025-03-21 05:29 95K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3723-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01_denatured.1x76.bwameth.hg38_CHH2025-03-21 05:28 95K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3724-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.hg38_CHH2025-03-20 23:04 91K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3725-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01_denatured.1x76.bwameth.hg38_CHH2025-03-21 05:25 90K 
[ ]K562-KLF1-ENCFF674KVR.bed.gz2020-12-08 17:08 169K 
[ ]K562-NRSF-ENCFF707MDI.bed.gz2021-01-30 19:33 346K 
[ ]KLF1.files2025-03-21 04:35 235  
[ ]KLF1.table2025-03-21 04:36 305  
[ ]MACS2025-03-21 02:30 955  
[ ]MACS-region-stats2025-03-21 02:30 1.2K 
[ ]NRSF.files2025-03-21 04:52 602  
[ ]NRSF.table2025-03-21 04:53 929  
[ ]SAMstats-1x36mers.files2025-03-20 08:35 1.0K 
[TXT]SAMstats-1x36mers.sh2025-03-20 08:35 3.4K 
[ ]SAMstats-1x36mers.table2025-03-21 04:26 909  
[ ]SAMstats-2x36mers.files2025-03-19 20:51 3.0K 
[ ]SAMstats-L3696-K562_KLF1_rep1.1x50mers.unique2025-03-21 01:23 154  
[ ]SAMstats-L3697-K562_KLF1_rep1.1x50mers.unique2025-03-21 01:23 154  
[ ]SAMstats-L3698-K562-ChIP-SMF-CTCF.1x76.bwameth.hg382025-03-21 01:31 163  
[ ]SAMstats-L3699-K562-ChIP-SMF-Pol2-4H8.1x76.bwameth.hg382025-03-21 01:32 163  
[ ]SAMstats-L3700-K562-ChIP-SMF-H3K4me3.1x76.bwameth.hg382025-03-21 01:32 163  
[ ]SAMstats-L3701-K562-ChIP-SMF-H3K27ac.1x76.bwameth.hg382025-03-21 01:31 163  
[ ]SAMstats-L3702-K562_NRSF_test_CST.1x50mers.unique2025-03-21 01:28 155  
[ ]SAMstats-L3703-K562_NRSF_test_MA5-44189.1x50mers.unique2025-03-21 01:23 154  
[ ]SAMstats-L3704-K562_NRSF_test_MA5-35361.1x50mers.unique2025-03-21 01:20 154  
[ ]SAMstats-L3705-K562_NRSF_test_MA5-55715.1x50mers.unique2025-03-21 01:22 154  
[ ]SAMstats-L3706-K562_NRSF_test-ZR31455-25UL.1x50mers.unique2025-03-21 01:29 155  
[ ]SAMstats-L3707-ATF4_ATF4pos_rep1.1x50mers.unique2025-03-21 01:28 155  
[ ]SAMstats-L3708-ATF4_ATF4pos_rep2.1x50mers.unique2025-03-21 01:25 154  
[ ]SAMstats-L3709-ATF4_GFP_rep1.1x50mers.unique2025-03-21 01:27 154  
[ ]SAMstats-L3710-ATF4_GFP_rep2.1x50mers.unique2025-03-21 01:27 154  
[ ]SAMstats-L3717-K562_SMF_native_NEB_test_1M_cells_1uL_CseDa01.1x76.bwameth.hg382025-03-21 02:25 164  
[ ]SAMstats-L3718-K562_SMF_native_NEB_test_1M_cells_5uL_CseDa01.1x76.bwameth.hg382025-03-21 02:42 164  
[ ]SAMstats-L3719-K562_SMF_native_NEB_test_1M_cells_10uL_CseDa01.1x76.bwameth.hg382025-03-21 02:18 164  
[ ]SAMstats-L3722-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.032025-03-21 02:42 164  
[ ]SAMstats-L3722-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.hg382025-03-21 02:03 162  
[ ]SAMstats-L3723-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.032025-03-21 02:31 164  
[ ]SAMstats-L3723-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.hg382025-03-21 02:05 162  
[ ]SAMstats-L3724-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.032025-03-21 03:07 164  
[ ]SAMstats-L3724-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.hg382025-03-21 02:06 162  
[ ]SAMstats-L3725-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.032025-03-21 02:39 164  
[ ]SAMstats-L3725-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.hg382025-03-21 02:07 162  
[ ]SAMstats_CseDa01.files2025-03-21 04:43 2.0K 
[ ]SAMstats_CseDa01.table2025-03-21 04:43 1.5K 
[TXT]SampleSheet.csv2025-03-21 04:29 2.2K 
[ ]TSS-profile-L3722-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.03_CHH2025-03-20 23:25 99K 
[ ]TSS-profile-L3723-Symbiodinium_microadriaticum_K562_2M_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.03_CHH2025-03-20 23:33 100K 
[ ]TSS-profile-L3724-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.03_CHH2025-03-20 23:55 99K 
[ ]TSS-profile-L3725-Symbiodinium_microadriaticum_K562_200K_SMF_CseDa01.1x76.bwameth.Smic_04-503SCI.03_CHH2025-03-20 23:52 99K 
[ ]all.250319_NB551514_0272_AHKVJYBGYW.fastq.lines2025-03-19 23:59 11  
[TXT]bedRPKMfromBAM.sh2025-03-19 23:33 3.1K 
[TXT]macs2.sh2025-03-19 20:41 3.6K 
[TXT]makewiggle-1x36mers.sh2025-03-19 20:51 4.1K 
[TXT]makewiggle-stranded-1x36mers.sh2025-03-19 20:51 8.7K 
[TXT]map-1x36mers.sh2025-03-19 21:42 9.9K 
[TXT]run_spp.sh2025-03-20 08:35 1.7K 
[TXT]samtools-index-1x36mers.sh2025-03-19 20:52 1.8K 
[TXT]wigtobigwig-wig-1x36mers.sh2025-03-19 20:52 3.8K 
[TXT]wigtobigwig-wigplusminus-1x36mers.sh2025-03-19 20:52 8.0K 
[ ]z2025-03-24 05:55 137K 
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443